Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1389 ATGTCTTCTCGCAGATCAAGTGGAAGAGTGGCTAGTGGTAGAGTTGCATTAGAAAATAGAGTCCCGTTACCATTGCTGCCTGCTCCTACAACAAATTTGCAATGGGATGAGCTTAAACCACTTTCAGGAAAACCATACTGTCATAATGTTCTTTCATCTTCAAATCTCGGTCCCCGTTTTCATATGGGGCCATCGATCAACTTACGTTTAGAACTTCCTTCTAATACGGTCCCTACCATTCTCAACTATTGGGGCAAGAGCTGGGACATGGTGTATTATGGACATAGCAAGCAGCAGATTTTTAATACCACAGGCTGGAAAAAGTTTGCTGTTGATAATTGTTTGAGGGTTGGAGATGCATGCATTTTTGAGCTGATGGAAAGCAGTGACGAGAAAGTCATCTTTGAAGTTCAAATTCTTAGAGGTGACATCCCATccaaatttcttgaaaatgaaatgattggaggtgaaaatgaaaatgaaataggtCAGAGTTCGGAAATGCCAATTGTCCTTAACTAG 522 0.3774 MSSRRSSGRVASGRVALENRVPLPLLPAPTTNLQWDELKPLSGKPYCHNVLSSSNLGPRFHMGPSINLRLELPSNTVPTILNYWGKSWDMVYYGHSKQQIFNTTGWKKFAVDNCLRVGDACIFELMESSDEKVIFEVQILRGDIPSKFLENEMIGGENENEIGQSSEMPIVLN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1389 173 SMART B3_2 46 143 IPR003340 GO:0003677
Ssu5g1389 173 CDD B3_DNA 50 141 IPR003340 GO:0003677
Ssu5g1389 173 Pfam B3 DNA binding domain 79 135 IPR003340 GO:0003677
Ssu5g1389 173 ProSiteProfiles B3 DNA-binding domain profile. 79 143 IPR003340 GO:0003677
Ssu5g1389 173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 38 151 - -
Ssu5g1389 173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 151 IPR044837 -
Ssu5g1389 173 SUPERFAMILY DNA-binding pseudobarrel domain 43 141 IPR015300 -
Ssu5g1389 173 Gene3D - 35 143 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1389 103 143 REM Transcription Factor Family AT4G33280 48.780 2.77e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu5g1389 B3 3.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1389 - - gmx:100804948 246.128