Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1388 ATGTTGGGTGGCCTATACGGAGACCTTCCTCCACCTTCCTCCGCCGAGGAAGACAACAAACCCACCCCCAATGTGTGGTCCTCCAGCACCAAGATGGCCCCGGCCACGCTCCGCAAGCCCGCGTCCCTCATCGCGCCCCCGCAAACCCTCCTCCGATCCCAGCCCAAGCCCAAGCCCGCCAGCAACCCTCCCTCCCTTCCCAAGACCGTTCTCTCCTCCACGCCCGCCCCGCCCCCGGACGATGCCCTCCAGCCCGCCCTCGTCGGGGTCCAGTCCACCGTCCTCGAGGAGTACGACCCGGCCCGGCCCAACGACTACGAGGAGTACCGCCGGGAGCGCAAGCGCAAGGCCCGCGAGGCCGAGGTGATGCGGGAGCTCGAGCGCCGCCGccaggaggaggaggaggaggagcgGGAGcgggagagggagagggagagggagagagagagggatTACGGCAGCGGAGACTCGAGGCTGAATGTCTCCGGCGAGGAGGCGTGGAGGAGGCGCGCGGCCATGAGTGGGGCGGTGCCGAGGTCGCCGTCGCCGCCGCCGGGGAATTCGGACGGATTTAGCATTGGGAAGTCGGAGACGGGTGGGTTGGGGGTGGGGGCTGGCGGGCAGATGACGGCAGCGCAGAGGATGATGGCAAAGATGGGGTGGAAGGAGGGGCAGGGGCTGGGGAAGCAGGAGCAGGGGATTACCACTCCTTTGATGGCAAAGAAGACGGATAGACGAGCTGGGGTTATTGTGAATGCCAGTGACAATAGCAAGAAGGTGAAGAGTGTTAACTTCAATGGAGTGCCTACCAAGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTGGAAGAAGAGGTAGGATCAGAATGTGCAAAGTATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAACCAAATTTCCCCACTGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGATGAGGAGAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCTCCTGA 1131 0.5676 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLIAPPQTLLRSQPKPKPASNPPSLPKTVLSSTPAPPPDDALQPALVGVQSTVLEEYDPARPNDYEEYRRERKRKAREAEVMRELERRRQEEEEEERERERERERERERDYGSGDSRLNVSGEEAWRRRAAMSGAVPRSPSPPPGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFNGVPTKVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1388 376 Coils Coil 106 151 - -
Ssu5g1388 376 Gene3D - 267 365 IPR012677 -
Ssu5g1388 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 357 IPR000504 GO:0003723
Ssu5g1388 376 Pfam G-patch domain 211 250 IPR000467 GO:0003676
Ssu5g1388 376 MobiDBLite consensus disorder prediction 18 35 - -
Ssu5g1388 376 PIRSF SPF45 3 372 IPR040052 GO:0045292
Ssu5g1388 376 PANTHER SPLICING FACTOR 45 SPF45 1 367 IPR040052 GO:0045292
Ssu5g1388 376 SUPERFAMILY RNA-binding domain, RBD 274 360 IPR035979 GO:0003676
Ssu5g1388 376 SMART G-patch_5 206 252 IPR000467 GO:0003676
Ssu5g1388 376 SMART rrm2_1 272 353 IPR003954 GO:0003676
Ssu5g1388 376 MobiDBLite consensus disorder prediction 57 82 - -
Ssu5g1388 376 ProSiteProfiles G-patch domain profile. 208 254 IPR000467 GO:0003676
Ssu5g1388 376 CDD RRM_UHM_SPF45 269 365 IPR034653 -
Ssu5g1388 376 MobiDBLite consensus disorder prediction 1 209 - -
Ssu5g1388 376 MobiDBLite consensus disorder prediction 100 155 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1388 214 249 C2H2 Transcription Factor Family AT5G26610 61.111 6.64e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1388 K12840 - gmx:100800998 574.318