Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1387 ATGCTAGCTGCCTTGGTCTTACTACCAACAACGTGGTTGAGAAGCACGGGAGCTATGGCCTATGTTTCATTCGGTGGGGTATtggtttctattattttaattggttgtgTTGTGTGGGTGGGTGGTGATGGTGTGGGTTTTCATGAAAGAGGCCAGTTAGTAGATTGGAAGGGATTGCTTCCTGCTGTTATGATTGTATGCTTTGTGGCAAGCACTATTACCAATGCATCCATTGCTGTTTTAGGCTACACAATGTTCGGAGATGACTCGATGTCTCAAATAACCTTAAATCTACCGTCAAAGAAAATAAGTACTAAAATAGCAATTTATACCACAATAATCAATCCTTTCACTAAGTATGCTGTTCTAATCACTCCAATAGCAAATGCAATTGAGGACAAATGGCTTTTGAGCAAGAGAAAGCCTGTTGCTATTATGATTAGAACAATTATCGTGCTCAACACTCTGCTTGTGGCACTATTCATGCCATTTTACGAATACATTATGGCGTTTGTTGGTGCATTCTCGTGTGTGGCAATTTCATTGTTGTTCCCTTGCCTATGCTACTTAAAGATAAACGAAGCTGCTAGGCGATTTGGGTTGGAGTtgatcatcatcattacaaTTCTTCTCATAGGAATCAAATCAGATGGAAACCTTTACAGCGTCGTCAACATGACACAAGCAATAAAACAAGCAATTTGGTTTGCACCTGGCATAACATGCAACACTAATCCATCTGGTAGTCGCCAGCTTAATGAGATATTTCTTTGTGTGGATAAATCATCCTCCAACTTCATTGAATTTCCAATACTACCAAAGGGACTTCGAAGTTGTACAGACAATGTTGAGTTTCCCATATTCTAG 867 0.3829 MLAALVLLPTTWLRSTGAMAYVSFGGVLVSIILIGCVVWVGGDGVGFHERGQLVDWKGLLPAVMIVCFVASTITNASIAVLGYTMFGDDSMSQITLNLPSKKISTKIAIYTTIINPFTKYAVLITPIANAIEDKWLLSKRKPVAIMIRTIIVLNTLLVALFMPFYEYIMAFVGAFSCVAISLLFPCLCYLKINEAARRFGLELIIIITILLIGIKSDGNLYSVVNMTQAIKQAIWFAPGITCNTNPSGSRQLNEIFLCVDKSSSNFIEFPILPKGLRSCTDNVEFPIF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1387 288 Pfam Transmembrane amino acid transporter protein 63 195 IPR013057 -
Ssu5g1387 288 PANTHER OS06G0228500 PROTEIN 1 63 - -
Ssu5g1387 288 PANTHER OS06G0228500 PROTEIN 61 214 - -
Ssu5g1387 288 PANTHER OS05G0424000 PROTEIN-RELATED 1 63 - -
Ssu5g1387 288 PANTHER OS05G0424000 PROTEIN-RELATED 61 214 - -
Ssu5g1387 288 Gene3D - 202 288 IPR036430 GO:0003723|GO:0033897
Ssu5g1387 288 SUPERFAMILY Ribonuclease Rh-like 213 286 IPR036430 GO:0003723|GO:0033897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1387 Ssu-Chr5 44834872 44838126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1387 4 214 Amino Acid or Auxin Permease AAAP Family AT3G28960 37.705 1.31e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1387 K15015 - gmx:100812006 305.064