Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1385 ATGAAGCTGGGGCTGCGAATCCTCCTCATTGCTCTGGTGCTGGTGTTCCcattttcctcttcttcaaaACCCAAAGACCCATTCCTCGGAATCGCTCCCGAAGATGACAAGTATTACAAGTCTTCCGATGTAATAAGATGTAAAGATGGATCCGGAAAATTCAACAAGGCGCAGCTCAATGACGACTTCTGCGATTGCGCTGATGGCACCGATGAGCctgGTACATCTGCATGTCCGGGTGGAAAATTTTATTGTTGGAATACAGGACATGTTCctgtttatttgttttcatcTAGAGTGAATGATGGAATTTGCGATTGCTGTGATGGAACAGATGAATATGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCCGGGAAAGTTGCTCGAGATAGGCTGAAAAAAAAGATTGCCACTTATCAAGAGGGCGTCAAATTGCGAAAGCAAGAAATTGAACAAGCTAAAGTAGCTATGGAGAAGGATGAGGCagaactttcaaaattaaaaaaggaagaaagtatACTTAAAGGAATTGTGAGACAGCTAAAGGATCATAAAGAACAAATAGAGAAGGCAGAGGAGAAGGAACGTTtgcagaaagaaaaagaagagaaggagaaaaaggaGTCTGAGGAGAAGGCTAATGAAGCAAAAGATAAAGCTGATGAAGATACGGGGCATAGAAATGAAGCTGGAAAGCATTCAGATGTTGAAGACAATGCTGTGGAAAATAACcatgataaaatagaaaatctaGAGGGTTCTGCTGCAGATCAGGATGAAGCAGGGGACAAATTAGCAGATGTACTTGATAATGATGATGGAGCCAGTGATAGTCCTGGAAGTGAAGGATCTTTGCTTAATAAAGTGGAAGAgAATGCAAATGAAGCTGAGGAAGAACCTACTGTTAAATCTGAAACTGATTTTAAGGTCGGAAACAAAGAGTCTTCAGATGAAATCATCAATACGGCAAATGAAGTATCTGAAAATACCGAGGGATTATCAAGGGAAGAGTTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATAAGCAAAGTGCTGATCCTGATACTACATTAGACAATGAAGATCACGAAGATCTTCCAAAGGGGACAAATAATGAGGAATATGAAGGCTATGCTTCTGAAACTGACGATGACCGCCACAAATATGATGATGAAGAGGAAATTGATGAAGAATATCGAGAGGATGAGCATGATGACCTTAGTTCCTCCAAATCTGATTCTGATACTGAACTAGACTTGTCAGATAATCCTTCTTGGTTAGAGAAAATACAGAGAACTGTACGGAATATTTTTCAAGCTGTTAATCTATTCCAGGCTCCGGTGAACCAGTCAGATGCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCTAAAATACAATCTAGAATATCGAGTCTGACGCAAAagctaaaacataattttgGTCCAGCAAAGGAGTTTTATTCATTCTATGATCATTGCTTTGAGAGCAAGGAGAACAAGTACACTTACAAAGTTTGCCCCTATAAACAGGCTTCTCAGGAGGAGGGCTATTCCACCACCCGTTTGGGGCGCTGGGACAAATTTGAGGATTCATACAAAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgTCAGGCTAAAATGCGGGTTGAAGAATGAGATTACTGATGTAGATGAACCGAGCCGTTGCGAATATGTAGCTGTATTATCTACCCCAGCCCTTTGTCAAGAGGAAAAGCTGAAGGAGTTACAACACAAGCTAGACTTATTGAATTCAGAACAACCAGCAAACCATGATGAGTTGTGA 1869 0.3874 MKLGLRILLIALVLVFPFSSSSKPKDPFLGIAPEDDKYYKSSDVIRCKDGSGKFNKAQLNDDFCDCADGTDEPGTSACPGGKFYCWNTGHVPVYLFSSRVNDGICDCCDGTDEYDGQVKCPNTCWEAGKVARDRLKKKIATYQEGVKLRKQEIEQAKVAMEKDEAELSKLKKEESILKGIVRQLKDHKEQIEKAEEKERLQKEKEEKEKKESEEKANEAKDKADEDTGHRNEAGKHSDVEDNAVENNHDKIENLEGSAADQDEAGDKLADVLDNDDGASDSPGSEGSLLNKVEENANEAEEEPTVKSETDFKVGNKESSDEIINTANEVSENTEGLSREELGRLVASRWTGENTDKQSADPDTTLDNEDHEDLPKGTNNEEYEGYASETDDDRHKYDDEEEIDEEYREDEHDDLSSSKSDSDTELDLSDNPSWLEKIQRTVRNIFQAVNLFQAPVNQSDAARVRKEYDESSAKLSKIQSRISSLTQKLKHNFGPAKEFYSFYDHCFESKENKYTYKVCPYKQASQEEGYSTTRLGRWDKFEDSYKVMVFSNGDKCWNGPDRSLKVRLKCGLKNEITDVDEPSRCEYVAVLSTPALCQEEKLKELQHKLDLLNSEQPANHDEL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1385 622 MobiDBLite consensus disorder prediction 318 332 - -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 195 274 - -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 394 410 - -
Ssu5g1385 622 Pfam Glucosidase II beta subunit-like protein 464 622 IPR036607 -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 411 425 - -
Ssu5g1385 622 Pfam Glucosidase II beta subunit-like 23 172 IPR028146 -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 359 378 - -
Ssu5g1385 622 Coils Coil 146 222 - -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 195 428 - -
Ssu5g1385 622 PANTHER BNACNNG14010D PROTEIN 5 622 - -
Ssu5g1385 622 Coils Coil 594 614 - -
Ssu5g1385 622 MobiDBLite consensus disorder prediction 294 317 - -
Ssu5g1385 622 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 5 622 IPR039794 -
Ssu5g1385 622 Coils Coil 460 480 - -
Ssu5g1385 622 Gene3D - 498 596 IPR009011 -
Ssu5g1385 622 ProSiteProfiles MRH domain profile. 503 598 IPR044865 -
Ssu5g1385 622 SUPERFAMILY Mannose 6-phosphate receptor domain 503 596 IPR009011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1385 Ssu-Chr5 44811623 44820710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1385 19 622 Calmodulin-binding Proteins AT5G56360 60.193 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1385 K08288 - gmx:100807083 1041.95