Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1384 atgGAAGAAGTTTGTCCGAATATTGAGCCACTTTTTGATGAAAGCGAAGAGGTTGATGCTGAGGGGAACTCTTCTGTAGCAGAACATGATCTTGAATCTTTAAACTCACAACCGAAGAACTCTCCACTTCCAACTGTGGGTCTGGAGTTTGATTCCTTTGAAGAAGTTTACAACTTCTACAATATCTATGCAAAGGAAAAAGGCTTTGGCATCAGAGTGAGCAATTCATGGTTTAGGTCAAAGAAAAAAGAGCGCTACAGAGCAAAACTTAGCTGCAGTAGTGCtggttttaagaaaaaaagtgaagcCAATAATCCAAGACCAGAAACAAGAACCGGTTGTCCTGCAATGATAGTGATTAGAATGGTCGAGTCCAAGAGATGGAGAATAGTCGATGTTAAGcttcaacacaaccatcaagtGAGTCCACAAAGCAAACGGTTTTACAAGTCACACAAGAAAATGATCCTTGAAGCCAGCAAATCACAACCACCGCCAGAGCCTGTAGCAGAAATACACACCATCAAGTTGTATCGAACAACTGTAATGGATGTTGATTACAATGGTTACTCAAATTTTGAAGGAAGTCATGACAccaattttgataaattaaaatatttggaaCTTAGAGAAGGGGATGCCAGtgctatatataattatttttgccGAATGAAGTTGACTGAtccaaatttcttttacttgtttGATATTGATGATGGTGGGCacctaaaaaatgttttctggGCTGATTCCAGGTCAAGGATtgcttataatttctttaatgacACAGTTACAATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTAATATCATTTGTTGGTGTAAATCATCATGGACATTCTGTACTATTGGGTTGTGGCTTCCTTGGACATGAATCAGTGGATTATTTTGTCTGGATATTCAAGGCATGGCTTAAGTGTATGCTTGGTCGTCCTCCACATGTTGTCATTACTGACCAGTGCAAGCCATTACAAATTGCAGTTGCTCAGGTTTTCCCTCATGCTCATCATTGTTATTCTTTGCAGTATATCATGCAGAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGATATGAAGCAATCAAAAGACAGTTGTATAATGCTGTCTACGAGTCATTAAAGATAGTTGAGTTTGAATCTTCTTGGGCTGATATGATTAAATGTTATGGACTGGGAGATAACAAGTGGCTTCAGACATTGTATAAAGATAGGCATCTATGGGTTCCTGTTTACCTGAAAGATGCTTTTTTTATAGGACTGATCCCAACTAAAGAAACCGAGGGCCTGACTGCATTTTTTGATGGATATGTGCATAAACACACATCCTTTAAGGAATTTCTTGACAAGTATGACTTAGCTCTGCACAGGAAGCACTTTAAAGAAGCCATGGCGGATTTGGAGTCTAGGAAAGTAGGCTTTGAATTGAAAACAAGATGTAATTTTGAGGTCCAGCTTGCAAAGGTGTATACAAAAGAAATCTTTACGAAGTTTCAATCTGAGGTTGAGGGCATGTACTCTTGCTTCAACACAAGACAGGTTAATGTCAATGGATCTATAATAACATACATTGTGAAAGAAAGAGTTGAAGGTGAAGGGAATGAGAAGGGGGTTAAAagttttgaagttttatttGAGACTACACAATTGGATATTCGTTGCATTTGCAGTATGTTCAATTACAAAGGATATCTGTGCAGGCATGCATTGAATGTTCTCAATTACAATGGCATTGAGGAAATCCCATCTCGGTACATCCTGCACCGTTGGAAGAGGGATTTCAAGCAAACGTTTAATCAATTCCATGTCTCTGATAATATTGATACCTACAACCCTGTGCACTTGTATACTCATCTGTTTAACAATGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACGGGAGCATTATATGGTTGCTTTAAAAGAACTGGAGGAATTGTTAGACAAGTTTGATATAGAGGACAATAACTTAATGTAA 2007 0.3602 MEEVCPNIEPLFDESEEVDAEGNSSVAEHDLESLNSQPKNSPLPTVGLEFDSFEEVYNFYNIYAKEKGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESKRWRIVDVKLQHNHQVSPQSKRFYKSHKKMILEASKSQPPPEPVAEIHTIKLYRTTVMDVDYNGYSNFEGSHDTNFDKLKYLELREGDASAIYNYFCRMKLTDPNFFYLFDIDDGGHLKNVFWADSRSRIAYNFFNDTVTIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFVWIFKAWLKCMLGRPPHVVITDQCKPLQIAVAQVFPHAHHCYSLQYIMQRVPEKLGGLQGYEAIKRQLYNAVYESLKIVEFESSWADMIKCYGLGDNKWLQTLYKDRHLWVPVYLKDAFFIGLIPTKETEGLTAFFDGYVHKHTSFKEFLDKYDLALHRKHFKEAMADLESRKVGFELKTRCNFEVQLAKVYTKEIFTKFQSEVEGMYSCFNTRQVNVNGSIITYIVKERVEGEGNEKGVKSFEVLFETTQLDIRCICSMFNYKGYLCRHALNVLNYNGIEEIPSRYILHRWKRDFKQTFNQFHVSDNIDTYNPVHLYTHLFNNALPVLEVGAQSREHYMVALKELEELLDKFDIEDNNLM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1384 668 MobiDBLite consensus disorder prediction 1 40 - -
Ssu5g1384 668 Pfam FAR1 DNA-binding domain 58 142 IPR004330 -
Ssu5g1384 668 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g1384 668 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Ssu5g1384 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 23 665 - -
Ssu5g1384 668 Coils Coil 650 668 - -
Ssu5g1384 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 665 IPR031052 GO:0006355
Ssu5g1384 668 SMART 26again6 561 588 IPR006564 GO:0008270
Ssu5g1384 668 Pfam MULE transposase domain 264 356 IPR018289 -
Ssu5g1384 668 Pfam SWIM zinc finger 560 583 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1384 Ssu-Chr5 44787916 44789922 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu5g1384 MULE 1.5e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1384 K17604 - gmx:100811666 1277.31