Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1380 ATGGTTATGACGAGAGACCTTGAAGCAGCAACCGTTGCTCTACTTCGTGGAATGAGGATTTGGAAGGTGGAAATGGTTGGATTATTACGGGATTGTCTGTGGAAGCCGTTGCTGCAGAGCCATAGAGCGAGGTTTAGCCTTTGCCTAAACCACCAAAGCATTAGCCCACTCATTAAGGTGGCAAAGCTGGTTTATCAGAGCACGAAGAAGAGGGCCGGTGGACCCAATTGCCCTGTTACCGGAAAGAGGATTCACGGGatgtttaatgtttttgtaTCAAGGTATACAAGGGCAAAAGGCACCTTTAAGACACTAGgggtttgtttttttatttctgtaaGATCGAAGAAACCTCTGGGACCAACCGGAAATAGAGTAGAGAAGAAAGAGGATAACAGAACAACATTGTCTTACGTTGCTTTTGCCAATTCCGAGTGTTTGATTAGTGATGCTGCCATGAACCCCACCAACACCGTCTTCGCATATTTGGAGCACCCTGTATCAGAAGATACCCTTCAGTTACTCTTTGAAGTTTCTAACTCTTCTAACTTGGAAAAGTCCTTAGAGATTCTCATTCAGGATGCCAAATCCGATTCCGGGCGTTTGGAACTAGCTTCTAAAAGGATTCTCCCTGCAGTACTTAACATTGTTCCCTCACTCACTCATGCTTCCCATCATCATCATCGTAATCATATTCTTTCTTTGTGTTTCAAGCTCCTCAGAAACTTGTGTGCTGGAGAAGCTGCAAACCAGGGGTCTTTTCTTGAGCTTAATGGGGTGGCTGTTGTTTGTAGTGTTCTGAGGTCAGAGGCTGGTTCTTCAGACCCTGATCATGGATTGGTTCGTTGGGGTCTGCAGGTTCTGGCAAATGTTTCTTTGGCAGGGAAACAGCATCAGCGTGCTATTTGGGAAGAGCTCTATCCGGTTGGGTTTGTATCACTTGCTAGAGTTGGCACCAAGGAGACTTGTGACCCGTTGTGTATTGTGATTTATACATGTTGTGATGGAAACCCTGAATGGTTTAAAAAGTTGTCCAGTGATGATGGCTGGCCTGTAATGGCAGAAATCATTAGAACTGTTTCTTCTGCTAGTTTTGGTGAGGATGGGTTGAAGTTGCTCCTTTCAAGAATCTGCCTAGAAGAATCTCAATTGCCTGTGTTGTTTTCCAAATTACAGTTTGTGGATGTTCCTGAGGGTGAAGTTACTGAGTCAAAAGATGATCAGTTTTCATTTGAACAAGCATTTCTTCTGCAAATCCTATCTGAAATCTTAAATGAGCGGCTTAGAGATGTTACTGTTTCGAAGGATGTTGCATTGTTTGTttttggaatattcaagaagtcTGTTGGGGTTCTTGAACATGCAATGAGAGGAAAGTCTGGTCTTCCTAGTGGCTTTGCTGGGGTTGATATTCTTGGCTACTCACTTACCTTATTGAGAGATATTTGTGCTCAAGATGGCATGAGAGGTAATACAGAGGATGCAAATGATGTTGTTGATGTGCTACTGTCATATGGCATCATAGAGtcacttttgtttttgcttGGGGCCCTTGAACCTCCAGAAATAATCAGGAAAGGACTCAAACAATGTGAGAATCAAGATGGTGCTAGTTGTTCCTCAAAACCATGCCCGTACAAGGGCTTCAGGCGAGACATAGTTGCACTTATTGGCAATTGTGTTTATAGAAGGAAGCATGCACAAGATGAAATCCGGAATAGGAATGGAATTCTACTGCTATTGCAGCAGTGTGTTATGGATGAAGATAATCCTTTCCTGAGAGAATGGGGCATATGGTCTGTGAGGAATATGTTGGAGGGCAATGATGAGAACCAAAAGGTAGTTGCTGACTTAGAGATTCAGGGATCTGTTGATGTGCCTGAAATTACTGCACTCGGTCTCCGAGTGGAAGTTGATCAGAGAACTAGACGTGCAAAGCTCGTAAACGTCCCATGA 1956 0.4233 MVMTRDLEAATVALLRGMRIWKVEMVGLLRDCLWKPLLQSHRARFSLCLNHQSISPLIKVAKLVYQSTKKRAGGPNCPVTGKRIHGMFNVFVSRYTRAKGTFKTLGVCFFISVRSKKPLGPTGNRVEKKEDNRTTLSYVAFANSECLISDAAMNPTNTVFAYLEHPVSEDTLQLLFEVSNSSNLEKSLEILIQDAKSDSGRLELASKRILPAVLNIVPSLTHASHHHHRNHILSLCFKLLRNLCAGEAANQGSFLELNGVAVVCSVLRSEAGSSDPDHGLVRWGLQVLANVSLAGKQHQRAIWEELYPVGFVSLARVGTKETCDPLCIVIYTCCDGNPEWFKKLSSDDGWPVMAEIIRTVSSASFGEDGLKLLLSRICLEESQLPVLFSKLQFVDVPEGEVTESKDDQFSFEQAFLLQILSEILNERLRDVTVSKDVALFVFGIFKKSVGVLEHAMRGKSGLPSGFAGVDILGYSLTLLRDICAQDGMRGNTEDANDVVDVLLSYGIIESLLFLLGALEPPEIIRKGLKQCENQDGASCSSKPCPYKGFRRDIVALIGNCVYRRKHAQDEIRNRNGILLLLQQCVMDEDNPFLREWGIWSVRNMLEGNDENQKVVADLEIQGSVDVPEITALGLRVEVDQRTRRAKLVNVP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1380 651 Gene3D - 161 441 IPR011989 -
Ssu5g1380 651 PANTHER ATAXIN-10 175 650 - -
Ssu5g1380 651 Gene3D - 449 626 IPR011989 -
Ssu5g1380 651 Pfam Spinocerebellar ataxia type 10 protein domain 549 642 IPR019156 -
Ssu5g1380 651 SUPERFAMILY ARM repeat 175 616 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1380 Ssu-Chr5 44737038 44745902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1380 61 99 Cytoplasmic Ribosomal Protein Gene Family AT1G26880 61.538 3.07e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1380 K19323 - gmx:100795092 867.455