Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1371 ATGGCTCTTTGGGTGTATTTTGTGCTTTTCCTGGCTCTGACTGACCATTCCAGTGCTCTTTATTGTTTATGCAAAGATGGCGTGGGTGATCAAGCTCTTCAGAAAGCGATAGATTATGCTTGTGGAGCTGGAGCTGATTGTACCCCTATTGTCCAAAACGGAGCTTGTTATCAACCCAACACTGTGAAGGATCACTGTAACTATGCGGTTAATAGCTATTACCAGAGAAAGGGTAATGTTCAGGGAAGCTGTGATTTTGCAGGTGCTGCCACAACTAGTCAAAATCCACCCACTACATCATCTGGATGTGTCTACCCCTCAAGTCCTAGCAATGCAGGAACAACACCAACTGGTTCACCAGGCACAACACCATCAACAGGTACAACTACAGGCACAAACACAACAACTGGTAGTCCTAATGTGTTTGGAATGAGTCCAACATCTACAACTGGTATCAATGACAGTGGAGCTAATTTGGAAGGCACCAACTCTAGGTTGCTATTGCTCTGTGTTCTAACCTTGTGGTTAGCAATCAGGGTCTGA 543 0.4494 MALWVYFVLFLALTDHSSALYCLCKDGVGDQALQKAIDYACGAGADCTPIVQNGACYQPNTVKDHCNYAVNSYYQRKGNVQGSCDFAGAATTSQNPPTTSSGCVYPSSPSNAGTTPTGSPGTTPSTGTTTGTNTTTGSPNVFGMSPTSTTGINDSGANLEGTNSRLLLLCVLTLWLAIRV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1371 180 Pfam X8 domain 21 91 IPR012946 -
Ssu5g1371 180 Gene3D - 14 113 - -
Ssu5g1371 180 SMART X8_cls 20 105 IPR012946 -
Ssu5g1371 180 PANTHER BETA-1,3 GLUCANASE 1 171 IPR044788 -
Ssu5g1371 180 MobiDBLite consensus disorder prediction 94 158 - -
Ssu5g1371 180 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1371 Ssu-Chr5 44626545 44628296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1371 15 98 Glycoside Hydrolase AT2G01630 42.353 5.99e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1371 - - gmx:100811705 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1371 5 44626545 44628296 Ssu2g1503 2 61874287 61875996 PCT