Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1366 ATGGAGGGGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCACATGACTGGAGAAAGAAGCAATGTTGATGGTGGCATGTTCATCAAGTTGGATGGTGTGAGTAAGAAGAGAGATTTATGGTGTGAAGATGATGCTGGAAACTCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGGTGCCAACTATGAACAGGAGGAGAGGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCACTGAAGGCTCTCTGTGGCCACATGGCTTGTCACtcagagaaagagaagagaaccATCAGGTGTGAAGACAGTGAGAAGAAGCTGAAATTGGTTATGGATAGTCAATCTGATACTGATACTTGTGCTCCATCGCATCCAAGGAGATCCAAGAGAATGAAGGTGAAGACCATTAACCTTTCCAATcaccctttttcttcttctcctccttcttctGTTGTTCCTTTGGCCAATGGCTCTTCACCTGTATCAGAGGTGGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTGTCCAGAGATTCTAGCTTCAAGGGTCGTTTTGCTTCGGTTACTGAGTCTTCTGATAACAACTCGATTATTCTAGAAGCAAAATCATCCTCTCTTGATACCCGGATTGGTGTCAGCAATGGTAATAACAACTTTGTCTCTAATAATGCTTATGATCTTGCGGAGAAGAAGTTGCTTCAGGTTAAGGATATCAAGTTGAAGTCTGCTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGAGGTTTCAAATATGGTCCCAAAACCAAAATGGTAGACTCTTATGTCTCAAATGATGAATTTAAGGGGGTCAAGTTGGGGGATAAGTCTCGGTTTTTTGAGGACTATGATGTTGAATCATGGAAGATCGTGAATAGAGGCAGAAGCAAATACACTTCAACTGTGGCTAAGAAATTAGTGATGGAGGATTTGGATTATGATAGAACAGATGGAACTACAAGGAAGTTTGATTCAAGAAAGATAAGCAGCTATGATTCTCTTGGTCGTCACAATCTAGTTGGCGTTCCTAGCAAGAAGATAGCAAATGGTTTTGCCAATGAAGTATATGAGAATGGCACAAAAGGTTGGAAGTATGAGTGCTTGGAGGGTGAAATGGACTATGGTTCTTATGATTCAACAGAGGAGAGCTATGAAAACAGTTCAGAAACTGAATCTTTTCCTGCTCTCAGGTCTCATAACAGTAAGGCTCTCAATGGAAAGAAGTCCAACAAGGCCAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGAATATGAGTGTCCAATTTGCTACAAAATTTTCAGGTCAGGCCAAGCATTGGGAGGCCACAAAAGATCCCATTTCATTGGAGGTTCTGAGGAAAACACTGTGGTGATCAAACAAGTTGCTCCTGTTGTTCCTTGCCTGATCGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1530 0.4137 MEGRKYVCKYCSKRFPCGKSLGGHIRTHMTGERSNVDGGMFIKLDGVSKKRDLWCEDDAGNSIYGLRENPKKTMRFVHSGGANYEQEERFCKECGKGFPSLKALCGHMACHSEKEKRTIRCEDSEKKLKLVMDSQSDTDTCAPSHPRRSKRMKVKTINLSNHPFSSSPPSSVVPLANGSSPVSEVEQEQEEVARCLMLLSRDSSFKGRFASVTESSDNNSIILEAKSSSLDTRIGVSNGNNNFVSNNAYDLAEKKLLQVKDIKLKSAEFGASDNSGSRGFKYGPKTKMVDSYVSNDEFKGVKLGDKSRFFEDYDVESWKIVNRGRSKYTSTVAKKLVMEDLDYDRTDGTTRKFDSRKISSYDSLGRHNLVGVPSKKIANGFANEVYENGTKGWKYECLEGEMDYGSYDSTEESYENSSETESFPALRSHNSKALNGKKSNKAKKKLKSKKSREYECPICYKIFRSGQALGGHKRSHFIGGSEENTVVIKQVAPVVPCLIDLNLPAPVDE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1366 509 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 509 - -
Ssu5g1366 509 SMART c2h2final6 454 476 IPR013087 -
Ssu5g1366 509 SMART c2h2final6 6 28 IPR013087 -
Ssu5g1366 509 SMART c2h2final6 89 111 IPR013087 -
Ssu5g1366 509 MobiDBLite consensus disorder prediction 408 448 - -
Ssu5g1366 509 MobiDBLite consensus disorder prediction 160 179 - -
Ssu5g1366 509 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Ssu5g1366 509 MobiDBLite consensus disorder prediction 434 448 - -
Ssu5g1366 509 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Ssu5g1366 509 MobiDBLite consensus disorder prediction 409 433 - -
Ssu5g1366 509 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 509 - -
Ssu5g1366 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 454 476 IPR013087 -
Ssu5g1366 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 34 IPR013087 -
Ssu5g1366 509 Pfam C2H2-type zinc finger 91 113 - -
Ssu5g1366 509 Pfam C2H2-type zinc finger 454 476 - -
Ssu5g1366 509 Pfam C2H2-type zinc finger 6 29 - -
Ssu5g1366 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Ssu5g1366 509 SUPERFAMILY beta-beta-alpha zinc fingers 90 476 IPR036236 -
Ssu5g1366 509 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Ssu5g1366 509 ProSitePatterns Zinc finger C2H2 type domain signature. 456 476 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1366 Ssu-Chr5 44472016 44473545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1366 4 509 C2H2 Transcription Factor Family AT1G26610 41.571 5.44e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g1366 zf-C2H2_6 9.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1366 - - vun:114177115 670.233