Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1353 ATGGTTGGCGGTGGAAATGGAGAGGGAGAGCAAGCACCGCCCTCGACGGTGGCGCGTCCCGGAAGCAGTCTCCTGCCACGCGCTTCCAGGGAGAGTGTTTTCAACGGTGGGCCCGCAGTGGGGTACGGCCATGACCCCATGACTCTGCTTTCCAGCTTCTTCGGCGACGGCGATGAGTGTAAGTCGTTCTCGGAGCTCCTCGCCGGCGCCATGGTGGACCCCACTATACCCTCACCCATGCCCACGTTCACCCTTCCACCTGGGTTCAGCCCCGCTACCTTCCTCGATTCACCTTCTTCTCAACATGTAATGTACGGGCACTTTGGAATGGCACACCAGCAGATGCTAGCACAGGTTACACCTCAGGCTGTGCGAGCCCACTCCAATGTGCAAATCCAAGCTGAACATCCATTCTCTATATCAGCAATGCCTGCTACCTCATTGACACAGGTTCCTACAGCTACTTCCAGTACTGCACAACAGCTGATACCACCCTCAATGCCAGATTCTGGGGTGACAGAATCCCTTGGTTATGCTCACTCTGAACAAAAATTTCAGTCTTCTTCTGTGAATGTTGATAAGCCTAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTGAAGGGTAGTGACGTCTCTCGAAGTTATTATAAGTGCACACATCCAAATTGTCCTGTCAAGAAAAAGCTTGAGCGTTCTCTTGAGGGTCATGTAACTGCAATTATTTATAAAGGACAGCACAATCATCAACGTCGTCATCCCAGCAAGCTCACAAAAGACACCCTAGCTTCAAATGAAAATTcagatagattgaaagaagaGATGAGTTTTCACTCAGTGTCTAAGATGGATCTGGAATCTAGTCAGGCAACAGCTGAACATGGGTCAGGAACAAGTGATAGTGAGGAAGTAGGTGATCATGAAACTGAAGTAGACGAAAAAAATGATGAACCTGATCCCAAGAGGAGAAACACAGAAACTAGGCTCCAGGATCCAGCCTCTTTACATGGAACTGTCGCAGAGCCTAGAATCATTGTGCAAACAACAAGCGAAGTGGATCTCCTAGATGATGGATATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCAACGGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACATAATCATGATGTGCCAGCAGCTAAGACTAATAGCCACACACTAACAACAGTGCATCACAGCTAA 1302 0.4762 MVGGGNGEGEQAPPSTVARPGSSLLPRASRESVFNGGPAVGYGHDPMTLLSSFFGDGDECKSFSELLAGAMVDPTIPSPMPTFTLPPGFSPATFLDSPSSQHVMYGHFGMAHQQMLAQVTPQAVRAHSNVQIQAEHPFSISAMPATSLTQVPTATSSTAQQLIPPSMPDSGVTESLGYAHSEQKFQSSSVNVDKPNDDGYNWRKYGQKHVKGSDVSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGQHNHQRRHPSKLTKDTLASNENSDRLKEEMSFHSVSKMDLESSQATAEHGSGTSDSEEVGDHETEVDEKNDEPDPKRRNTETRLQDPASLHGTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLTTVHHS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1353 433 SUPERFAMILY WRKY DNA-binding domain 195 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 MobiDBLite consensus disorder prediction 284 301 - -
Ssu5g1353 433 SUPERFAMILY WRKY DNA-binding domain 350 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g1353 433 MobiDBLite consensus disorder prediction 155 174 - -
Ssu5g1353 433 MobiDBLite consensus disorder prediction 258 283 - -
Ssu5g1353 433 MobiDBLite consensus disorder prediction 317 332 - -
Ssu5g1353 433 MobiDBLite consensus disorder prediction 246 345 - -
Ssu5g1353 433 ProSiteProfiles WRKY domain profile. 196 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 431 IPR044810 GO:0003700
Ssu5g1353 433 Gene3D WRKY domain 180 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 Gene3D WRKY domain 343 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 Pfam WRKY DNA -binding domain 359 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 Pfam WRKY DNA -binding domain 197 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 SMART WRKY_cls 358 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 SMART WRKY_cls 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 MobiDBLite consensus disorder prediction 182 204 - -
Ssu5g1353 433 ProSiteProfiles WRKY domain profile. 353 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1353 433 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 16 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1353 Ssu-Chr5 44257125 44260011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1353 17 427 WRKY Transcription Factor Family AT2G03340 53.092 6.61e-143 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g1353 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1353 - - gmx:100802109 625.935