Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1341 ATGGAACAAAAGAAAGCTACAAGCATTGGAAGCCCCAAAGGTTTCACTCTCAAGCTAAAGAGCTTCTCTACTCACTTTCTTATAAATGCTTGTGCTCTCCTATGCTGCTATGtaccaaaaccaaaaccaaaccaaaaccaaGCCTTAGCCCTTATGAATGAGAAGATGGGGAACAAGAGGAAAAGATGGGAAGGTGAAGGAGGGGAAAAGAGTAGTGAAGAAGGGAACATTGAATGGGAAAAGCTAAGGGAAGAGGCAGCATCAATGGCTGCTGCTATACTTGGAGCTAGAAAAGCTAAGAATAAACGTTACATTGGGGTGCGCCAAAGACCTTCAGGACGATGGGTGGCTGAAATCAAAGACACCATACAAAACATTAGACTATGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAAGCAGCTCGTTTGCTTCGTGGTGCCAACACTCGCACCAACTTCTTTCCTTGCCAATCTTCTCCTTCTGTTCCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACATGACCTCTTCATGTATGGTTACCACTCCTTTTCCTACTAACCACTATGAACAAGAAACCAAAGCAGAACCCGAACCCGAACCTGAACCCCATTTGTATCACCAAATAGAAGAACCCCACTATGGGAATTTTTTAGATATGGTAGGAAATGGGATTGTTGAAGAAAGTTATTATGGTGCTGGTTATAGTTCTTCTGCCATAACTACTTGTGACTATAGTTGTGgaacaaatgaagaaaattttaaccaaGAGGGCATCAGGGAGGATTTCGGATTCGGGTATCATTGTGCTGACAATGTTTATGATGAAAACAACCAGATTGTGAGCGATAAAGGAGAGTTTGAAGGCTGTGATGTTGGGATCACTGATTTTCAGTTTTTGGACACTGCTGGATCATTGAGTTACTCTTTTTCTCCATTTGAGATAGCAGAGGAAATGGTGGGATCAATGGAGCAAGAGAAATATGGTGTTGATGATTCACCATTACTTAGAGAAACTTTCAGGATGAAGTATGAACGCAAATTCTCAGCTTGTCTTTACACCCTAATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAGATGGAAAGGAATTGGAAAAATCTTGA 1176 0.4056 MEQKKATSIGSPKGFTLKLKSFSTHFLINACALLCCYVPKPKPNQNQALALMNEKMGNKRKRWEGEGGEKSSEEGNIEWEKLREEAASMAAAILGARKAKNKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPCQSSPSVPALPPKIAKLLLLRLKARNMTSSCMVTTPFPTNHYEQETKAEPEPEPEPHLYHQIEEPHYGNFLDMVGNGIVEESYYGAGYSSSAITTCDYSCGTNEENFNQEGIREDFGFGYHCADNVYDENNQIVSDKGEFEGCDVGITDFQFLDTAGSLSYSFSPFEIAEEMVGSMEQEKYGVDDSPLLRETFRMKYERKFSACLYTLIGVSECLRLQVGPEDGKELEKS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1341 391 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 CDD AP2 102 159 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
Ssu5g1341 391 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 59 391 - -
Ssu5g1341 391 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 59 391 - -
Ssu5g1341 391 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Ssu5g1341 391 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1341 Ssu-Chr5 44022071 44023246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1341 98 179 AP2-EREBP Transcription Factor Family AT5G19790 63.529 3.38e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g1341 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1341 K09286 - gmx:100793940 441.81