Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1338 ATGAGTTCGGGTAGTAGCAGTGGTAAGGAGAAGGAGAAGCAGAGGGTGAGTCGCACGTCGTTGATACTGTGGCACGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTTCAGGAGGATCCTTCGCTGGTTAAGGCCATGGATTACGACAACCGCACCCCGCTCCACGTGGCATCCCTCCACGGCTGGATCGACGTCGCCACCTGTTTGATTGAGTTCGGCGCCGACGTCAACGCCCAAGATCGTTGGAAAAACACTCCTCTGGCTGATGCGGAAGGAGCTAAGAAGACTAACGTGATCGAGCTTTTGGAATCGCATGGAGGCTTGTCTTATGGGCAAAATGGAAGCCATTTTGAACCCAAGCCTGTTCCGCCGCCGTTGCCGAACAAGTGTGATTGGGAAATCGACCCTTCCGAGCTCGACTTCTCCAACTCAGCGCGAATTGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTCAAACGTATTCTTCCATCTCTCTCAGAAGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACATCCCAATATAGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGCTAATTACTGAGTATTTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCACTTAGTCCTTCAACAGCTATCAACTTTTCCATGGACATTGTCAGaGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCCGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACGGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTaccGTTACATGGCTCCTGAAGTTTTCAGACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCTTATGAAGGTGCAAAACACGCTGCTGAGGGACACAGGCCTACTTTTCGGGCAAAGGGTTATATCCCTGAATTGCAAGAGTTAACGGAGCAGTGTTGGGCTGCTGACATGAATCAGAGACCTTCCTTCATAGACATCCTTAAACGGCTTGAAAAGATCAAGGAGAATTTACCTTCAGATCATCACTGGCACTTGTTTGCTCCATAA 1260 0.4667 MSSGSSSGKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVKAMDYDNRTPLHVASLHGWIDVATCLIEFGADVNAQDRWKNTPLADAEGAKKTNVIELLESHGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSARIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFRHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYEGAKHAAEGHRPTFRAKGYIPELQELTEQCWAADMNQRPSFIDILKRLEKIKENLPSDHHWHLFAP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1338 419 SMART ANK_2a 51 80 IPR002110 GO:0005515
Ssu5g1338 419 ProSiteProfiles Protein kinase domain profile. 143 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1338 419 Pfam Ankyrin repeats (3 copies) 18 82 IPR002110 GO:0005515
Ssu5g1338 419 SUPERFAMILY Ankyrin repeat 22 109 IPR036770 -
Ssu5g1338 419 ProSiteProfiles Ankyrin repeat profile. 51 83 IPR002110 GO:0005515
Ssu5g1338 419 Pfam Protein tyrosine and serine/threonine kinase 146 401 IPR001245 GO:0004672|GO:0006468
Ssu5g1338 419 Gene3D - 2 117 IPR036770 -
Ssu5g1338 419 PIRSF ILK 2 418 - -
Ssu5g1338 419 ProSiteProfiles Ankyrin repeat region circular profile. 51 83 - -
Ssu5g1338 419 Gene3D Phosphorylase Kinase; domain 1 128 222 - -
Ssu5g1338 419 Gene3D Transferase(Phosphotransferase) domain 1 223 414 - -
Ssu5g1338 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Ssu5g1338 419 CDD STKc_MAP3K-like 149 401 - -
Ssu5g1338 419 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 410 - -
Ssu5g1338 419 PRINTS Tyrosine kinase catalytic domain signature 218 231 IPR001245 GO:0004672|GO:0006468
Ssu5g1338 419 PRINTS Tyrosine kinase catalytic domain signature 372 394 IPR001245 GO:0004672|GO:0006468
Ssu5g1338 419 PRINTS Tyrosine kinase catalytic domain signature 256 274 IPR001245 GO:0004672|GO:0006468
Ssu5g1338 419 ProSitePatterns Protein kinases ATP-binding region signature. 149 170 IPR017441 GO:0005524
Ssu5g1338 419 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 7 410 - -
Ssu5g1338 419 SUPERFAMILY Protein kinase-like (PK-like) 141 415 IPR011009 -
Ssu5g1338 419 SMART serkin_6 143 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1338 Ssu-Chr5 43965148 43974043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1338 6 418 MAP Kinase Kinase Kinase AT1G14000 85.714 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Ssu5g1338 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1338 - - gmx:100793237 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1338 5 43965148 43974043 Ssu5g1338 5 43965148 43974043 ECH