Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1334 ATGGccaaaCTACATGGTAACGACCATAACGACGAAGACATTAACCAAAACACCCTCCTCTGTTTCAACAATGACAACTCCACTTTTAGCGTCACCAGCAGCTACTGCTCCACTAGCAGCATCCGCAAGATCGATCTGATCCCCCCTGACATAGTCTACGACCTCTGTTGCATCGCTAAATGCATGGTCTCCTCCAGCTACTTAGGCGAATGCATCCAAGTCCACGAAAACATAATTGAGAAGCTCAGCATTGGCATCGTCCAAAGGCTTGAGTGGGAGCaacttaagaacaaaatcaaacagTGGATAAGAACAGCGAAGGTTTGCGTGAGAACGTTCTTTGCTAACGAGAAGAAACTCTGCAAGAAAATCTTTAACGATGTTGGAATCGCTATTAATGATGCTTGCTTCATGGAGACCATAAAAAGGTTGCCAAAGAAGTTGTTTAAGATTCTCGATTTGCATGATGCTTTGATAGATTTGATGCCTGATATTAATGTTGTGTTTGACTTGAAGTCTTCAAAGAGTATTAGGGTTCAGGCTGCGAAGATTCTATCTCGGTTGGGCGAGGTTGAGAGGGGGATTTTGTTTGAGTATTTACATCAATTCAATatctga 618 0.4094 MAKLHGNDHNDEDINQNTLLCFNNDNSTFSVTSSYCSTSSIRKIDLIPPDIVYDLCCIAKCMVSSSYLGECIQVHENIIEKLSIGIVQRLEWEQLKNKIKQWIRTAKVCVRTFFANEKKLCKKIFNDVGIAINDACFMETIKRLPKKLFKILDLHDALIDLMPDINVVFDLKSSKSIRVQAAKILSRLGEVERGILFEYLHQFNI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1334 205 Pfam Exo70 exocyst complex subunit 100 202 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu5g1334 205 Gene3D Exocyst complex component Exo70 9 203 - -
Ssu5g1334 205 SUPERFAMILY Cullin repeat-like 38 201 IPR016159 -
Ssu5g1334 205 PANTHER EXOCYST COMPLEX PROTEIN EXO70 32 199 IPR004140 GO:0000145|GO:0006887
Ssu5g1334 205 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 32 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1334 Ssu-Chr5 43860394 43861759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1334 37 199 EXO70 exocyst subunit family AT1G72470 56.186 1.96e-61 200