Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1332 ATGGCCAGTGTCTTTTCTGCATGTTCAGGTTctgcttttctttttcacagCAGAAGCTTCTTCCCCTTTGCAGCCAAAGGTCCTCTCCTTCACCTCAAAAGGCCTCTCTCTGCCAACTGTGTAGCTTCTTTGAGAACTGAGATATCAGTGCCTCCAGCAGTTGACACCTTCTGGCAGTGGCTCAAGGAAGAGGGTGTTGTCTCTGGCAAGACTCCAGTGAAGCCTGGTGTGGTGCCAGAAGGCCTAGGACTGGTTGCACTCAAAGACATTTCTAGGAATGAGGTTGTCTTGCAGGTGCCCAAGAGGCTTTGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGGAAAGTGTGCAGTGGATTGAAGCCTTGGTTGGCTGTTGCACTGTTCCTGATAAGAGAGAGGTCAAGTGGTGATTCTCTTTGGAAGCACTACTTCAGTATTCTGCCAAGGGAAACTGACTCTACTATATATTGGTCAGAGGAGGAGCTCAAAGAGCTGCAAGGGACTCAACTTCTGAACACAACACTGAGTGTGAAAGAGTATGTGGAGAGTGAATTTAGGAGACTGGAAGAAGAAATCATACTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACACTTGATGACTTCTTCTTGGCGTTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCATTAGCTGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGTCTTTTCTCTTGGGATTACTTATTTTCCCTAAGGAGCCCCCTTTCTCTCAAGGCTGGGGACCAGGTATATATccaatatgatttaaataaaagcaaTGCCGAGCTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGGAATGCATATACCTTGACTCTGCAGATATCTGAGTCAGACCCCTTTTTTAATGACAAACTAGACATTGCTGAGTCCAGTGGTTTTGGTGAGAAAGCATACTTTGACATCTTCCACAACCGCCCCCTTCCACCAGGGTTGCTTCCATATCTGAGACTAGTAGCTCTAGGGGGCACTGATGCTTTCTTATTGGAGTCAATATTTAGAAACTCCATCTGGGGTCATCTTGAATTGCCCGTGAGCCGTGACAATGAGGAGCTAATATGCAGAGTGGTTAGAGAGACCTGCAAAACTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGAAGCAAAGTTAGACTCAAGGCTTGCCATAGCAGTTGGAATTAGAGAAGGGGAGAAGAAGCTCCTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAATTGGAATTGGACCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAATGGTGATATCCTTGGGGACCTTGGAAAATTCTTCTAG 1470 0.4395 MASVFSACSGSAFLFHSRSFFPFAAKGPLLHLKRPLSANCVASLRTEISVPPAVDTFWQWLKEEGVVSGKTPVKPGVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLAVALFLIRERSSGDSLWKHYFSILPRETDSTIYWSEEELKELQGTQLLNTTLSVKEYVESEFRRLEEEIILPNKKLFPSPITLDDFFLAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFNDKLDIAESSGFGEKAYFDIFHNRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVVRETCKTALAGYHTTIEEDQKLKEAKLDSRLAIAVGIREGEKKLLQQIDEIFKEKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1332 489 Pfam Rubisco LSMT substrate-binding 320 444 IPR015353 -
Ssu5g1332 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 480 - -
Ssu5g1332 489 CDD SET_RBCMT 65 303 IPR044431 GO:0016279|GO:0018022
Ssu5g1332 489 Gene3D set domain protein methyltransferase, domain 1 50 303 - -
Ssu5g1332 489 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 34 480 - -
Ssu5g1332 489 ProSiteProfiles SET domain profile. 64 288 IPR001214 GO:0005515
Ssu5g1332 489 Gene3D - 304 468 IPR036464 -
Ssu5g1332 489 Pfam SET domain 81 287 IPR001214 GO:0005515
Ssu5g1332 489 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
Ssu5g1332 489 SUPERFAMILY SET domain 52 308 IPR046341 -
Ssu5g1332 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 15 487 IPR011192 GO:0009507|GO:0030785
Ssu5g1332 489 SMART set_7 69 294 IPR001214 GO:0005515
Ssu5g1332 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 482 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1332 Ssu-Chr5 43798394 43801430 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1332 57 243 NAC Transcription Factor Family AT3G56570 26.804 1.01e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g1332 SET 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1332 K00592 - gmx:100818113 889.026