Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1327 ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAAAAGCTCATGGCTTACATTGAAGAATTTGGCCACGGAAGCTGGCGTGCGTTGCCTGCCAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTAAGGTGGACTAACTACCTCCGACCCGACATAAAAAGAGGAAAGTTCAGTTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGAAACAGATGGTCAGCCATAGCAGCTCAGCTTCCCAAGAGAACCGACAACGAGATCAAGAACTACTGGAACACACACCTGAAAAAGAGGCTAACCCGAATGGGGATAGACCCCACAACCCACAAACCCAAAACCGATGCACTTGGTGGCTCGGGTAGTTGCCAATCCAAGGACGCAGCCAACCTGAGCCACATGGCCCAGTGGGAGAGTGCTCGTCTCGAAGCCGAAGCAAGATTGGTGAGGGAATCAAAGTTGCAAGTCCAGAATAACCTCGGATCCAGCTCCTCCACACAACCCGCGAGACTCGTCCTCAACaaaatcacaacacaacaaccCTCACTACCGCCATGCCTCGACATCCTCAAGGCGTGGCAAAGCTCATGGTCCAAGCCACAACCAGCAACAACCAAAGACAACAACACCAAAGTAATGCATAGCATGTACGCCATGATGTTATCCACCGACGACACCCTCGAGTCTCCAACGTCCACCTTGTGCTTCCCAGGAACAACAACCGTGCTTCCtgtctccaccaccaccaccaccaccaacaacaacaataacattgGACTGTTCAATGAAAACAACAACATGCTTATTTCTCTCACCACCACCAATGCCACGACCATGGATAGTGGGTTCGTGAAAGGGGCTGGTGACGACGCAATGTTACACTTGCAAGACGACGATATTATGGCGGCGGTGGAAGAAGCATTTAGAGCCACTACAGGGTACGACAACAACAGCAATAATATTGTTCCTCTCACACTCTCCAACAGTGTCGTCCTCGAAGGACTCAACAACGATGATAATGCGTTGGTTTATGACTCCAGCGATAACTTGGGCACGGAAGAAGAAAACCTGGCAATCATCAACGGGGATGGAAGCCTCTGCAACGTGAACCTCGAAGAGAATAATAAGCATTACTGGAATAACATATTCAATTTGGTGAACGACCCGCTGTCGGGTTCCTCTGTCTTCTGA 1239 0.4754 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGSCQSKDAANLSHMAQWESARLEAEARLVRESKLQVQNNLGSSSSTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPATTKDNNTKVMHSMYAMMLSTDDTLESPTSTLCFPGTTTVLPVSTTTTTTNNNNNIGLFNENNNMLISLTTTNATTMDSGFVKGAGDDAMLHLQDDDIMAAVEEAFRATTGYDNNSNNIVPLTLSNSVVLEGLNNDDNALVYDSSDNLGTEEENLAIINGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGSSVF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1327 412 CDD SANT 69 112 IPR001005 -
Ssu5g1327 412 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu5g1327 412 CDD SANT 16 61 IPR001005 -
Ssu5g1327 412 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu5g1327 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu5g1327 412 Gene3D - 13 66 - -
Ssu5g1327 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu5g1327 412 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu5g1327 412 MobiDBLite consensus disorder prediction 121 141 - -
Ssu5g1327 412 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 405 - -
Ssu5g1327 412 SMART sant 66 114 IPR001005 -
Ssu5g1327 412 SMART sant 13 63 IPR001005 -
Ssu5g1327 412 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu5g1327 412 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu5g1327 412 Gene3D - 69 116 - -
Ssu5g1327 412 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1327 Ssu-Chr5 43715467 43717221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1327 1 412 MYB Transcription Factor Family AT3G01140 47.596 2.08e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1327 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1327 K09422 - gmx:100799222 653.284