Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1326 ATGGCAGAAGAAGAGGAGCACTTGCAGCGGCTCAGATCAAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAAGGCCTCGATCGAAGCCTATTCCCTCTTCATCACTCTCTGCACCCAAAAACTCTCCGATTCTCACCCAAACCAAACCCACCTCCAAAAGCTTCGCAGATCGCTCTGCATAGCTTTATGCAACCGCGCGGAAGCGAGGTCCAAACAAAAGGACTTCCACTGCGCCCTTCAAGACTGTGACCGCGCTTTGGAACTCGATGCCACACATTTCAAGACCCTTTTGTGCAAAGGGAAGATCTTGCTCTGCCTCCACCGCTACTCCACCGCTCTTGAGTGCTTCAGAACCGCTATGCTTGATGATGAGAACTCCGAATGCGTAAGCGGGTACTTGGAGAGGTGCAAAGGTTTGGAGCTTTTGTCACGGACGGGGTGTTTGGACCTCTCAGATTGGGTTGTAAATGGGTTTCGTGGGAAGGTTCAAGAGCTCGCCGAGCACATTGGTGCTGTGGAGATTAAAAAATCTGAGATCAGTGGGAGAGGGTTGTTTGCAACGAAGAATATTGATTCTGGGTCGGTGATGTTGGTTACCAAGGCAACTGCCATGGAGAGGAGCATAATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTGTGACTTTGTTGGGAAGTGTCCCAAGACAAGGGGTTTGATTAATAGGTTGTCGTGTGGGGACAATGAGGATGAGCTTGAGGTGCCTGATGTTGGTCTCTTTAGGCCTGAGAGTGTCGAGAGGGACGGATTTGAGGTTGGTATTGACATGGTTAAGTTGGTTGGTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCTGCCAATGTGTTGAGGAGGGGCAATGATTGTTATTGTGTTGGGCTGTGGCTGCTCCCTTCCTTCATAAACCACTCTTGTTGCCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCCTCTAAGGATATGAAGGCTGGTGAGGAGGTCACTTTTGGTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGGCAATGAACTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAGGTGTTTGGAAAGCAAGAGGTGAGGGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTAGAGGAGCAGATGAAGAGGTGGAAGGTTAGGGGGAAGGAGAAAGGGTATTTGAGGGCATCGTTTTGGGCAGCATATTCTGAGGCTTATAGGTCAGAGAGGGCTATGAAGAGGTGGGGAAGGAGGATTCCTGCAGTGGAGGCTGTGGTTGATAGCATCACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGATGCTCATGGAGGAGTTGAAGAAAAACGGTGGTGGAGTTGTGGAGAGGGAGAAAGTTTTCAAGATGGCAAGAGAAGTGTTTGGGAAGGTTGCGAAAAAGCAAGCAATGAAGACACTTCTTGAGCTCTGCATTGGTGATTGA 1581 0.4908 MAEEEEHLQRLRSKATELFIREEWKASIEAYSLFITLCTQKLSDSHPNQTHLQKLRRSLCIALCNRAEARSKQKDFHCALQDCDRALELDATHFKTLLCKGKILLCLHRYSTALECFRTAMLDDENSECVSGYLERCKGLELLSRTGCLDLSDWVVNGFRGKVQELAEHIGAVEIKKSEISGRGLFATKNIDSGSVMLVTKATAMERSIIMGGVQDLSEDAQLAMWKNFIDKVCDFVGKCPKTRGLINRLSCGDNEDELEVPDVGLFRPESVERDGFEVGIDMVKLVGILDVNSLTEDAVSANVLRRGNDCYCVGLWLLPSFINHSCCPNARRLHVGDYLVVHASKDMKAGEEVTFGYFDPLCGLSKRKEMAMNWGIHCKCKRCRFEGEVFGKQEVREIEIGLERGMDVGGVVFKLEEQMKRWKVRGKEKGYLRASFWAAYSEAYRSERAMKRWGRRIPAVEAVVDSITDVVGGDHRLLKMLMEELKKNGGGVVEREKVFKMAREVFGKVAKKQAMKTLLELCIGD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1326 526 Coils Coil 1 21 - -
Ssu5g1326 526 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Ssu5g1326 526 Pfam SET domain 182 358 IPR001214 GO:0005515
Ssu5g1326 526 SUPERFAMILY TPR-like 8 134 IPR011990 GO:0005515
Ssu5g1326 526 Gene3D SET domain 278 388 IPR046341 -
Ssu5g1326 526 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 504 - -
Ssu5g1326 526 SUPERFAMILY SET domain 172 384 IPR046341 -
Ssu5g1326 526 ProSiteProfiles SET domain profile. 171 359 IPR001214 GO:0005515
Ssu5g1326 526 CDD SET_SMYD 314 384 - -
Ssu5g1326 526 SMART tpr_5 60 93 IPR019734 GO:0005515
Ssu5g1326 526 SMART tpr_5 94 127 IPR019734 GO:0005515
Ssu5g1326 526 SMART set_7 171 365 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g1326 SET 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1326 - - gmx:100812233 897.886