Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1325 ATGGAGGGTAGGACAAGCCCTGAACTCCCCCCTGGCTTTAGGTTTCACCCAACGGACGAGGAACTAATTGTGTATTACCTTTGTAACCAAGCCACATCAAAGCCATGCCCTGCATCTATCATCCCAGAAGTGGATATCTATAAGTTTGATCCATGGGAATTGCCAGataaaacagaatttggagaAAATGAATGGTATTTCTTTAGTCCACGAGACAGGAAGTACCCAAATGGGGTGAGGCCAAACCGAGCAGCCGTGTCTGGGTATTGGAAGGCCACTGGCACAGACAAGGCAATCCTTAGTGGATCTGAGCATGTTGGGGTGAAGAAATCTTTAGTCTTTTACAAGGGTAGACCACCAAAGGGTGTCAAGACTGATTGGATTATGCATGAGTATCGATTGGCTGAATCAAAAAAACCAACTAACAGGAAAATTGGGTCCATGAGGCTAGATGACTGGGTCTTGTGCAGGATCTATAAGAAGAAGAACGTGGGAAAAGCATTGGAGCACAACGAGGTACACCCAAGAGtccaaattaataatcttacaGCTGCAAATAATGATGGTGAACAGAAAATGATGAACCTTCCAAGGACTTGGTCCCTTACTTACCTTTGGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCTCCTATTGCTCAACctttgattttcaaattaacACCGGCAACATTGGAATAGACCCTTTTGTAAAATCTCAACCGGTTGAAATGACCAACAATTATGTAGCAGATTCAGGGAAGTACCAAGTGAAACAAGGTAGCGCCATTGACCAGCCCATATATGTGAAGCAAATGTATGATCTGCTAGGATACAACcaataa 849 0.4122 MEGRTSPELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAILSGSEHVGVKKSLVFYKGRPPKGVKTDWIMHEYRLAESKKPTNRKIGSMRLDDWVLCRIYKKKNVGKALEHNEVHPRVQINNLTAANNDGEQKMMNLPRTWSLTYLWDMNYLGPILSDGSYCSTFDFQINTGNIGIDPFVKSQPVEMTNNYVADSGKYQVKQGSAIDQPIYVKQMYDLLGYNQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1325 282 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Ssu5g1325 282 PANTHER NAC TRANSCRIPTION FACTOR 56 1 234 - -
Ssu5g1325 282 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Ssu5g1325 282 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Ssu5g1325 282 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 1 234 - -
Ssu5g1325 282 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1325 Ssu-Chr5 43574612 43576111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1325 1 225 NAC Transcription Factor Family AT1G69490 64.831 7.08e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g1325 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1325 - - gmx:100785110 511.916