Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1323 ATGGCTCTCATTGGGTTGCTCTTGATGGGTTTTCTCACAATGTTCTCCCCTGCTCATGCCTATGATGGAGGGTGGACTAATGCTCATGCCACTTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGTGGGGCTTGCGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTAAGCACAGCACTGTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAGGTGTGACAACGACCACAGGTGGTGCCTGCCAGGCTCCATTGTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCCAACAATGCAGGAGGGTGGTGTAACCCTCCTCTCCAACATTTTGATCTCTCTCAACCTGTCTTCCTTCGCATTGCTCAATACCGTGCTGGAATTGTGCCTGTATCCTACAGAAGGGTGCCCTGCAAGAGAAGGGGAGGCATAAGGTTCACCATCAATGGACATTCCTACTTCAACCTTGTTCTCATCACAAATGTTGGTGGTGCTGGGGATGTGCATACTGTGGCCATCAAAGGGTCCAGAACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTAAATGGTCAAAGCCTGTCCATCAAGGTTACCACCAGTGACGGCCAAAGTGTGGTGTCCTACAATGTTGCCCCAGCTGGCTGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 747 0.506 MALIGLLLMGFLTMFSPAHAYDGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCDNDHRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFLRIAQYRAGIVPVSYRRVPCKRRGGIRFTINGHSYFNLVLITNVGGAGDVHTVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSIKVTTSDGQSVVSYNVAPAGWSFGQTYTGAQFR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1323 248 SMART dpbb_1 60 145 IPR007112 -
Ssu5g1323 248 PANTHER EXPANSIN-A10 13 248 - -
Ssu5g1323 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Ssu5g1323 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Ssu5g1323 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Ssu5g1323 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Ssu5g1323 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Ssu5g1323 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Ssu5g1323 248 PANTHER EXPANSIN-A15 13 248 IPR002963 GO:0009664
Ssu5g1323 248 Gene3D - 155 247 IPR036749 -
Ssu5g1323 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Ssu5g1323 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Ssu5g1323 248 Gene3D - 12 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1323 Ssu-Chr5 43484826 43486192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1323 1 248 Expansin Gene Family AT2G03090 81.452 3.75e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1323 - - gmx:100527059 491.115