Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1322 ATGACCGATTTTCCCGGTCACCCGGACATGTTAACGATGGGCAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGctaaaaggaaaaatggaaTTATGAAAAAAGCTGCTGAATTATCTATACTGTGTGATATAGATATTATACTTCTCATGTTCGCACCAAATGGAAAGCCTTCATTATGCAGGGGGAGGCGCAGTAACCTAGAGGAGGTTATTGCGAAGTTTGCTCAACTAACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTCCTGGGTACAAGGTATGCCATACTGACACTAATTTATAATCAAGCCAGGCTATTACAGACTCAAATTTCTGAAACTCATAAGAGATTAAGTCATTGGACCGAGTttgataaaataagtaatgtgGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCACTTAATCAAATTCGAACCCATAAGgaaaatataaaaaagcagCAACTTGTGTCACTGCAATGCAATAACCAGTTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTCCAACCTCTGTCGTGGATTGCCAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGCTCAAGTATCAAAAATGAGATGTCTAACTCGGCGCAAGAAAATGGGGTCCTTAGTGACATGAACAGTACTGCCCCTATGAGACTACAGTTGAATGGGCAGTTTCCATACCTGccatacaattttaatttactgaATAATTTGAAGTTTCAACCAACTGCAGAGATCAACCCACATGAAAATCCTGCAGATTATCATGTGAATGGAAGCTTTGAAGCACCTAGATCGGGTTATGACTCTAGTCACCATGGTTGGGCTTCCACATCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCAGTTATATGCCCAGGCAAGTTCCACTAAAATTTACTTTGGCTTCACATAG 1113 0.3854 MTDFPGHPDMLTMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTRYAILTLIYNQARLLQTQISETHKRLSHWTEFDKISNVEQLGQMENSLRESLNQIRTHKENIKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSNMFLHKDVEGSASSSFGSYASYLGSSIKNEMSNSAQENGVLSDMNSTAPMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPADYHVNGSFEAPRSGYDSSHHGWASTSGPCAVTMFDEQLYAQASSTKIYFGFT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1322 370 CDD MADS 14 66 - -
Ssu5g1322 370 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 Coils Coil 89 109 - -
Ssu5g1322 370 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 Coils Coil 162 182 - -
Ssu5g1322 370 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 361 - -
Ssu5g1322 370 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 13 361 - -
Ssu5g1322 370 ProSiteProfiles MADS-box domain profile. 13 65 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 SUPERFAMILY SRF-like 14 107 IPR036879 GO:0003677|GO:0046983
Ssu5g1322 370 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 66 IPR002100 GO:0003677|GO:0046983
Ssu5g1322 370 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1322 Ssu-Chr5 43475407 43479926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1322 13 359 Type I MADS-box Gene Family AT2G03060 48.942 5.03e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu5g1322 SRF-TF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1322 - - gmx:100811701 608.216