Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1321 ATGGGAATGGTCTATTATGCTGACATggattctctttctctttgttcCAACTATGGTGTGGTTTCGTCTCATCAAGATTGCTATGTCTCCAATGGGGGCACAAACTGGGGTTTGCCCTTTATGAGGGAATGCCTTGGCAGGAGCAACTTTGAGGAACACCCCAACAACAGTGATGGGGTAGAAGAGGGTAAAGGGTCTGATAGCAGTGATGATGGGGGTGGGGAAGACAGTGAGAAAGTTAACCATAATGCTAATAACTTTAATGAAGAGAACCCTAATGAGAATTCTGTAAGCGGTTCCGGGCACTCCAAGCTGTGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAAAACTGGAACCTCATAGCTGAAAAGTTAGAAGGAAGATCAGGTAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGACCCGAGGATCAATAGGAGAGCATTCACTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGAAGAGTGGAGGAAAACAACACAACAAGCAGCATTGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCCTATTGTCTCAATCTCCCAAATGCAGGACTTGCCAATAACAACATGGCTAGTTTCCCATATGCTGCTGCACCCTTCCATGGAGTAGTGGCTCCTGCTGGTGGGGTTGACTATGGCTTAAATGGCTCACCCCACATGACTGCTGCCAAAGAAGCATTCTCAACCACCAAACTGGCCCCTCCTCATATTGCCTTGTATCCTCGACAAACACCACTTGATTTCTTTTCAGGTGCTAGAAGCAACGAAATGATGGGAGAGTATTGCAGCCAAAACAGATGCTGGGAGAGACCAAGTGATGCACCACCCCATCACCAGCCATCTGGTTTCTACACTCATTACCCCCAATATCTGATGCTAATGCACCACCAAAACAATCACAATTTTTACGGTTTCTCAAATTCCACAGCACAGATATTGGGCAGTGAAGCCTCGCTATCATCCGTGGCAGCAGAACACAGAGATGAAGGCGTGAGCAGTGACCCCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1293 0.471 MGMVYYADMDSLSLCSNYGVVSSHQDCYVSNGGTNWGLPFMRECLGRSNFEEHPNNSDGVEEGKGSDSSDDGGGEDSEKVNHNANNFNEENPNENSVSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENNTTSSIVSRDTATAGTEPPPPYCLNLPNAGLANNNMASFPYAAAPFHGVVAPAGGVDYGLNGSPHMTAAKEAFSTTKLAPPHIALYPRQTPLDFFSGARSNEMMGEYCSQNRCWERPSDAPPHHQPSGFYTHYPQYLMLMHHQNNHNFYGFSNSTAQILGSEASLSSVAAEHRDEGVSSDPPDAIPPPFIDFLGVGAT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1321 430 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Ssu5g1321 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Ssu5g1321 430 MobiDBLite consensus disorder prediction 79 102 - -
Ssu5g1321 430 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Ssu5g1321 430 MobiDBLite consensus disorder prediction 51 104 - -
Ssu5g1321 430 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Ssu5g1321 430 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Ssu5g1321 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Ssu5g1321 430 PANTHER MYB PROTEIN-RELATED 1 430 - -
Ssu5g1321 430 Gene3D - 161 233 - -
Ssu5g1321 430 SMART sant 107 156 IPR001005 -
Ssu5g1321 430 SMART sant 159 207 IPR001005 -
Ssu5g1321 430 CDD SANT 162 202 IPR001005 -
Ssu5g1321 430 CDD SANT 111 152 IPR001005 -
Ssu5g1321 430 PANTHER MYB TRANSCRIPTION FACTOR 1 430 - -
Ssu5g1321 430 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Ssu5g1321 430 Gene3D - 108 159 - -
Ssu5g1321 430 MobiDBLite consensus disorder prediction 231 251 - -
Ssu5g1321 430 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1321 Ssu-Chr5 43421321 43423096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1321 78 225 MYB Transcription Factor Family AT1G69560 76.159 2.45e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1321 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1321 K09422 - gmx:100810632 595.89