Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1317 atgtgcaaaatcaAAGCATGCGTTTGGTTCTGTCCAGCTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGCTTCACTGAGGCTATTAATCAGCTTGGAGGTGCAGAAAAGGCAACTCCAAAGGGTCTTATGAGAGTGATGGGGATTCCGGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCAACAGCTAGAAACCTCCTCTGACAACAAGCAACAAGGTTACAGTGAAATCCAGAGCAATGATAGTCATTGCAGCAAGGAAATCAGTATTGGGAGCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTCACGCTCTCCAAATGCAAATGGAAGCACAAAGAAAACTCCATGAACAAATTGAGGTCCAAAGACATTTGCAGCTTCGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTAACAAAGGCACAGGAAGCACTTGCAAGACACAGTTCTTCCACAACCGGTATAGAACTAGCAAAAGCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCATGTCCAAGCTCTCCCATTTCAGAACTGACAGAAACAAGAGGGCTCAGTTTGAACCTGTGGAGAGAGGAAACAAGACAGAGGAACCATGTGTTCACTTGA 663 0.4359 MCKIKACVWFCPADAKPRLKWTPELHQRFTEAINQLGGAEKATPKGLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETSSDNKQQGYSEIQSNDSHCSKEISIGSQNQMTESLKIAHALQMQMEAQRKLHEQIEVQRHLQLRIEAQGKYLQSVLTKAQEALARHSSSTTGIELAKAELSQLVSIINNACPSSPISELTETRGLSLNLWREETRQRNHVFT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1317 220 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
Ssu5g1317 220 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Ssu5g1317 220 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Ssu5g1317 220 MobiDBLite consensus disorder prediction 74 98 - -
Ssu5g1317 220 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 13 208 - -
Ssu5g1317 220 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 208 IPR044848 GO:0003700
Ssu5g1317 220 Gene3D - 15 73 - -
Ssu5g1317 220 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1317 Ssu-Chr5 43243340 43244493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1317 13 215 G2-like Transcription Factor Family AT1G69580 57.746 2.82e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu5g1317 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1317 - - gmx:100805252 349.362