Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1315 ATGACCATGTTTCTCTACCCTTCCTTTGTACTACTCCTTCTCTTCCTAGTCCTCAATCTACCACACACCACTCACTCCGATGACATTGCCATTTACTGGGGTTCAAACGATGGTGAGGGTAACTTAACAGAAACATGTGCAACTGGGTTGTACTCCTTTGTAAACATAGCATTCCTTGCCCATTTTGGAAACGGTCAAGCCCCTCAAGTGTTCCTTGGAAAGCACTGTAACCTTGCTGGGGGAAATTGTTCTTTAGTTGGCAGGGACATCAGAAACTGCCAAAAGCAAGGAATCAAGGTGATGCTATCCATCGGAGGCCCAAGTATGAGTTACTCTCTTGCTTCCTCTGAGGATGCTAAAAATGTTTCTGATTATTTGTGGCACAATTTCTTGGGTGGCAACTTATCTTCACGTCCACTAGGAGATGCCATATTAGATGGCATAGATTTTGGACTAGGGGGCTCCCTCTCCACACAACACTGGGAAGACCTTGCACGTTATCTCAAGTCTCATAAAAATGTGTACTTAAGTGGAGCACCTCAATGCCTTTTTCCAGATGGGACACTTGGCAAAGCCCTTGAGACTGGACTTTTTGACTATGTTTGGATACAGTTCTATAACAATCCTCTCTGCCAGTGCAATGAAGGTAATGTTTATGACCTTCTTAAAGCATGGAAGCAATGGACAACATCATTAAAAGCAGGGACAATATTCTTGGGGTTACCTGCATCTCCAACAGCAGCTGTGAGTGGCTATGTTCCACCTGATTTGTTGATCTCTCAGATCCTTGGTACGGTAAGAATGTCTTCTAACTATGGAGGGATGATGCTTTGGTCAAGGTACTATGATAAAGAGAGTGGATATAGTAAAACAGTTTTAGAAAATAGTGTTTGCCTGCAGCAAAGACAATCTGAATGTGGAAGGCACAAGAATGTCTTTGTTGAACGTTTAGGCTACATGGCCACGGATGGATTTGTAGTTTCTGAAAACAAGAGCATCGGCAGACAGTGTTGTGAGGTTATATGTAGGAACAATTGTTCCTGTGAGGCTTATGCTCCTCtagattttgttaataatactGGATGCCAGCTGTGGAGTAAAGGAACAAAGTTCATTAAAGATTCTGGAGGAAATTTAAAACGAGTTTACTTTGCCAAACATAAAGTGAACAAGCTGTGGATATGGTTTGTCATTGGTGTTGGAGCAGCTATTGCAGCACCTGCGTCCTGCTACTTATTCTATGTCTTGAGGAGAAAGTGCAAAGAAGAGGTGGATAGAAAAATGAAGCGAAAGAAACTGTTACTTGAGGTTGGAGGTAATGCGATAGGAAGTTATGGCAAAGCCAAAGAGACTACAAAAAAGGGGAAGGCAATCAATGAGATTGAAGTATTCAACTTGGAAAATATCATTGTCGCCACAAACAATTTCTCTCCTGATAATAAGCTAGGAGAGGGCGGTTTTGGTCCTGTCTATAAGGGAACATTAATTGATGGACAAGACATTGCAATAAAAAGACTTTCTAGAAGTTCAGGCCAGGGCCTAGTAGAGTTCAAGAATGAAGCTAAGATTATGGCCAAACTTCAGCACACTAATCTTGTGCGGCTTTTGGGGTTCTGCATTGACAGtgatgaaagaatacttgtctATGAGTACATGTCCAGCAAGAGCCTAGACCTTTATTTGTTTGATGCAAGTAGAAGGAATGAGCTAGATTGGAAAAAACGTCGTAACATCATTGAGGGCACTGCTCAAGGACTTGTTTATTTGCACAGATATTCAAGATTAAAGGTGATACACCGGGATTTGAAGGCAAGCAATATACTGCTTGATGAAGAAATGAATCCAAGAATCTCTGACTTTGGCTTGGCTAGAATATTTGGAGTGAAAGGATCTGAAGAAAACACTGAAAGAGTTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATCAATGGTGTTGTCTCAGTCAAAACAGATGTGTACAGCTTTGGTGTACTGCTACTTGAGATTATTAGTGGGTTGAAGAATAATAGTTGCATCCACTCAAATCAACCATTCAATCTCATAGCACACGCCTGGCAGCTGTGGAATCGAGGTAGAGCTCTAGAGCTGATGGATCCATCATTAAATGAATCACACAATTGTGATGAAGTACAAAGATGTATTCATATTGGACTCTTGTGTGTACAAGATCATGCAATAGAAAGACCTACCATTGAAGACGTTGTTTCTTTCCTATCAAATGATACCATCCAACTTGGTCAACCAAAGCAGCCTGCATTCTTCATGTATGTGGTTGCGGGAGAGTCGGGAAATCCTAATGGTAGCAAACAAGAAAGTTATTCGTTAAATCATTTATCAATCTCCACTACTTATGGGAGATGA 2388 0.407 MTMFLYPSFVLLLLFLVLNLPHTTHSDDIAIYWGSNDGEGNLTETCATGLYSFVNIAFLAHFGNGQAPQVFLGKHCNLAGGNCSLVGRDIRNCQKQGIKVMLSIGGPSMSYSLASSEDAKNVSDYLWHNFLGGNLSSRPLGDAILDGIDFGLGGSLSTQHWEDLARYLKSHKNVYLSGAPQCLFPDGTLGKALETGLFDYVWIQFYNNPLCQCNEGNVYDLLKAWKQWTTSLKAGTIFLGLPASPTAAVSGYVPPDLLISQILGTVRMSSNYGGMMLWSRYYDKESGYSKTVLENSVCLQQRQSECGRHKNVFVERLGYMATDGFVVSENKSIGRQCCEVICRNNCSCEAYAPLDFVNNTGCQLWSKGTKFIKDSGGNLKRVYFAKHKVNKLWIWFVIGVGAAIAAPASCYLFYVLRRKCKEEVDRKMKRKKLLLEVGGNAIGSYGKAKETTKKGKAINEIEVFNLENIIVATNNFSPDNKLGEGGFGPVYKGTLIDGQDIAIKRLSRSSGQGLVEFKNEAKIMAKLQHTNLVRLLGFCIDSDERILVYEYMSSKSLDLYLFDASRRNELDWKKRRNIIEGTAQGLVYLHRYSRLKVIHRDLKASNILLDEEMNPRISDFGLARIFGVKGSEENTERVVGTYGYMSPEYAINGVVSVKTDVYSFGVLLLEIISGLKNNSCIHSNQPFNLIAHAWQLWNRGRALELMDPSLNESHNCDEVQRCIHIGLLCVQDHAIERPTIEDVVSFLSNDTIQLGQPKQPAFFMYVVAGESGNPNGSKQESYSLNHLSISTTYGR 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1315 795 CDD STKc_IRAK 482 747 - -
Ssu5g1315 795 Gene3D Transferase(Phosphotransferase) domain 1 552 758 - -
Ssu5g1315 795 SUPERFAMILY Protein kinase-like (PK-like) 460 766 IPR011009 -
Ssu5g1315 795 Pfam PAN-like domain 309 367 IPR003609 -
Ssu5g1315 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Ssu5g1315 795 Gene3D Glycosidases 27 296 - -
Ssu5g1315 795 ProSiteProfiles PAN/Apple domain profile. 306 388 IPR003609 -
Ssu5g1315 795 SUPERFAMILY (Trans)glycosidases 24 291 IPR017853 -
Ssu5g1315 795 Pfam Glycosyl hydrolases family 18 29 283 IPR001223 GO:0005975
Ssu5g1315 795 Pfam Protein kinase domain 479 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1315 795 PANTHER OS01G0783800 PROTEIN 225 763 - -
Ssu5g1315 795 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 225 763 - -
Ssu5g1315 795 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1315 795 Gene3D Phosphorylase Kinase; domain 1 440 551 - -
Ssu5g1315 795 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 299 IPR001223 GO:0005975
Ssu5g1315 795 CDD GH18_hevamine_XipI_class_III 28 292 IPR045321 -
Ssu5g1315 795 SMART serkin_6 476 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1315 Ssu-Chr5 43234488 43238021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1315 469 762 Receptor kinase-like Gene Family AT4G23230 59.524 1.18e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1315 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1315 - - gmx:100809337 1396.72