Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1304 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTCATCCTCAACAATGGCATCCATTGTTGGAGAACGGTTCCCAAACTATCAGGTCTTCTAAGATGTGGAAAGAGCTGCAGACTGAGATGGATTAATTATCTGAGACCAGACCTTAAGAGAGGTGGCTTCACAGAAACGGAAGAGGATCAAATTATACAACTACATTCACGTCTTGGTTCTAACACAGTGAAGCACATTTTCAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAAAACCATTGGAACACAAGAATCAAGAAAAGGCTGAAACTCCTTGGTCTGGACCCTGTGACCCACAAGCCAATTGAGCAAAAGGAACATACCGATGAGGACACAAATAAGACCAATCCACAGCCCTGTATTTCCGGAGGGTCTGAAGAAAATGTGGAGATTAATTCCTTGGACAGTGATGGCACCAAAGAAATGACAAAAACAGAtgggaaaagagaagaaaacaagGTGACTTGGGATGATACCTCTGAActtttaaacaattttgaaatgcTATGCTCACAGCTGGACTTGGGATCATGGATGAGCCAAGAAAACAATACTAGCACTAATTCTTTATGTGGTTCTTCTGTCTCTCTGGATGACACTAGCCACCTTTCTGTGGATGAATCCTCCTACATACAGGAAAACTCCTTACAGCAATGGGTTGATAGTATGGATTCCATCCTATCATGGGATGGCTTCAATCCTCTTAATCAAGACATTTTCTTCTTGGAAAATAGGGAATAA 843 0.3986 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLSGLLRCGKSCRLRWINYLRPDLKRGGFTETEEDQIIQLHSRLGSNTVKHIFRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKEHTDEDTNKTNPQPCISGGSEENVEINSLDSDGTKEMTKTDGKREENKVTWDDTSELLNNFEMLCSQLDLGSWMSQENNTSTNSLCGSSVSLDDTSHLSVDESSYIQENSLQQWVDSMDSILSWDGFNPLNQDIFFLENRE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1304 280 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Ssu5g1304 280 SMART sant 13 63 IPR001005 -
Ssu5g1304 280 SMART sant 66 121 IPR001005 -
Ssu5g1304 280 MobiDBLite consensus disorder prediction 130 147 - -
Ssu5g1304 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu5g1304 280 CDD SANT 16 61 IPR001005 -
Ssu5g1304 280 MobiDBLite consensus disorder prediction 130 165 - -
Ssu5g1304 280 ProSiteProfiles Myb-like domain profile. 62 119 IPR001005 -
Ssu5g1304 280 CDD SANT 70 117 IPR001005 -
Ssu5g1304 280 MobiDBLite consensus disorder prediction 148 165 - -
Ssu5g1304 280 Gene3D - 11 67 - -
Ssu5g1304 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu5g1304 280 Gene3D - 69 123 - -
Ssu5g1304 280 PANTHER MYB DOMAIN PROTEIN 40 2 257 - -
Ssu5g1304 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 123 IPR017930 -
Ssu5g1304 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 257 - -
Ssu5g1304 280 Pfam Myb-like DNA-binding domain 67 117 IPR001005 -
Ssu5g1304 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1304 Ssu-Chr5 42783928 42784989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1304 1 144 MYB Transcription Factor Family AT5G16600 70.833 9.61e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1304 Myb_DNA-binding 6.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1304 K09422 - gmx:100783231 509.605