Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1292 ATGGAGAGCCAAAGCCAACTAGAAGTTTCAAATTCCGGCCAACACAGAAAAGGAACTACCTTCTTCAAAACTTGTTTCAATGGAATCAACTCCTTGGCAGGTATTGGGGTACTGTCAATGCCGTATGCAGTTTCTCAAGGAGGGTGGCTGAGTTTTATTTTGCTGCTTATTTTTGCAATGATATGTTGGTACACAGCGTTACTTCTGCAAAGGTGTATGAATAAGCATCCACTTATCAAATCTTACCCAGACATAGGTGAGGTTGCTTTTGGGCACAGAGGAAGAGCTGTGATAGCTACATTAATATATGTAGAACTGTTTCTAATTGCCGTTGAGCTTCTAATATTGGAAGGTGACAATCTGGAGAAATTATTTCCAAACATGAACTTGAAAATTTGTGGCCTTAGAATTGAAGGTAAGAGGGGTTTTGTCCTGCTAGCTGCTTTGGTCATATTACCAACGACGTGGTTGAGAAGCTTGGGAGCTCTGGCTTACGTTTCTTTTGGTGGGGTGGTAgcttctcttattttaattggttgtgTTGCGTGGGTGGGTGAAGTTGATGGTGTGGGGTTTCATGAAAGAGGTCACTTAATAAATTGGGAGGGATTGCCTACTTCTATGAGCCTTTTTGCGTTCTGTTACTGTGCACATGCAGTGATGCCAACACTCTGTAATTCTATGGATGATAGAAGTCAGTTTTACAAGGTTTTGATGGTTTGCTTTGTGGTAGGCACTATTATCTATGGGCTCATAGCTGTTTTAGGCTACACAATGTTTGGAGATTATTTGATTTCTCAAATAACCTTAAATCTACcatcaaaaaaaataagcacTAAAATAGCAATTTTTACAACAGTAATCAATCCTTTCACTAAGTATGCTGTTCTAATCACCCCAATAGCAAATGCTATCGAAGACAAATGGCTTATCTGCAAGAGAAAGCCTATTGCCATTCTGATTAGAACAATCATTGTGATCAGCACTGTGCTTATGGCACTATTCATGCCATTTTTCGATTACATTATGGCATTTATTGGTGCATTCTTGAGTGTGACAATCTCGATGTTGTTCCCTTGTCTCTGCTACCTAAAGATAAACAAAGCTGCTAGGCAATTTGGGTTGGAGTTGATCATCATCATTGCAATTCTTATCATGGGTACATTCATTGGAATAGTGGGTACCTACCTCTCGGTGAGGCACATAGTAAATCATCTATAG 1221 0.3849 MESQSQLEVSNSGQHRKGTTFFKTCFNGINSLAGIGVLSMPYAVSQGGWLSFILLLIFAMICWYTALLLQRCMNKHPLIKSYPDIGEVAFGHRGRAVIATLIYVELFLIAVELLILEGDNLEKLFPNMNLKICGLRIEGKRGFVLLAALVILPTTWLRSLGALAYVSFGGVVASLILIGCVAWVGEVDGVGFHERGHLINWEGLPTSMSLFAFCYCAHAVMPTLCNSMDDRSQFYKVLMVCFVVGTIIYGLIAVLGYTMFGDYLISQITLNLPSKKISTKIAIFTTVINPFTKYAVLITPIANAIEDKWLICKRKPIAILIRTIIVISTVLMALFMPFFDYIMAFIGAFLSVTISMLFPCLCYLKINKAARQFGLELIIIIAILIMGTFIGIVGTYLSVRHIVNHL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1292 406 Pfam Transmembrane amino acid transporter protein 18 396 IPR013057 -
Ssu5g1292 406 PANTHER OS05G0424000 PROTEIN-RELATED 15 404 - -
Ssu5g1292 406 PANTHER OS06G0228500 PROTEIN 15 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1292 Ssu-Chr5 42200864 42203762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1292 2 403 Amino Acid or Auxin Permease AAAP Family AT3G28960 48.148 3.64e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1292 K15015 - gmx:100812006 679.863