Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1291 aTGAGCGATCATCTGGTGCTGTTTGTGGACCGTCTGGTGCGGCCCGTGCCGGTGGAGCCGCTGGCCCAACACCCGGTCCAGCCCGCCCCCGAGCCCTCGACGCCGGTGGATGAGGCCGCGGCGGGGCCCTCCGGTTCCGCTCCGGCGGCGGAGGACGACAGCGACGGCGAGGACGCGCCGCTGCTGCAGGTGGCGGAGTGTCGCATTTGTCAAGAGGAGGACACCGTCAACAATTTAGAGACCCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGCAACGAGAAAGGAGACATAATTTGCGAGATATGTCATAAGTCCTATGAACCTGGTTACACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCGTTGGACTTGCGTGATCCCCGACTCTTGGCAATCGCAGAGGCAGAACGCCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAGTGGAGCTACATTTTGCCGTTCAGCTGCTCTGATTTTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGTTATATCATGGCGTGGGCGGTCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCCGTAGCACCAGGACCAACAATGAACACACACCAGGAACAAGTGTAA 858 0.5478 MSDHLVLFVDRLVRPVPVEPLAQHPVQPAPEPSTPVDEAAAGPSGSAPAAEDDSDGEDAPLLQVAECRICQEEDTVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGATFCRSAALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAVAPGPTMNTHQEQV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1291 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 273 - -
Ssu5g1291 285 SUPERFAMILY RING/U-box 65 117 - -
Ssu5g1291 285 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Ssu5g1291 285 SMART ringv_2 66 113 IPR011016 GO:0008270
Ssu5g1291 285 CDD RING_CH-C4HC3_MARCH 67 113 - -
Ssu5g1291 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 121 IPR013083 -
Ssu5g1291 285 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Ssu5g1291 285 Coils Coil 155 175 - -
Ssu5g1291 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 273 IPR033275 -
Ssu5g1291 285 MobiDBLite consensus disorder prediction 22 57 - -
Ssu5g1291 285 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1291 Ssu-Chr5 42131918 42134310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1291 55 112 C3H Transcription Factor Family AT2G37950 40.984 8.19e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1291 - - gmx:100817542 483.796