Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1290 ATGGTGGTTTCCTACAAAGAATGCCTCAAAAATCACGCTGCTAGCATAGGCGGACATGCACTTGATGGCTGCGGCGAGTTCATGCCTTCCTCTTCCACCAACCCCACCGACCCTCGCTCCCTCAAATGTGCCGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGAAcacaacaacaccaacaacaataaCCCCACTTTTCTAAGCTGCATCTACACCCCTTCAGCAGTAGCGCCACCACCACTCCCTCACCGAGCCATGAGCCAAAGCACGAGTCCGAGCCTGAGTTCAAGCCCGAGCCACAGTCCGAGCCCGATGTCAAGCCCCTCACCTCCGCCACTCTCGCACGTGCCACCTTACCACGCTTCCGCACCCCACGTGCTACTAGCCCTCGGCGCCGCCTATTCTGCACCCTCTGATGAACCGCACCACCACAGGAGTCTCAACTTTTCAAGCGTGTTGAAGAGCGAGAACCATCCGAAGAAGAGGTACAGAACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGTATAGTTTCTCTGAGAAATTGGGGTGGAGAATGCAGAAAGGGGACGATGGGTTGGTCCAGGAATTCTGCAGTGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTTTCAGGAAGAGATCAGAAGGGGgaaataataatacaagtaaTGATGATCCTCAAACTGGGGATCATGATGATGGCAATGCcagtggtggtggaggaggaTTTGATAGTGATATTAACAACCCCTACAACCCAAATAGCAGCAACAATGACATTCACATGAAGGAAGATGGATGTGTCGATGTTCATGTTTCTTCTCTTAATGAGATGTCTTCTTAG 882 0.4887 MVVSYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHNNTNNNNPTFLSCIYTPSAVAPPPLPHRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHVLLALGAAYSAPSDEPHHHRSLNFSSVLKSENHPKKRYRTKFSKEQKEKMYSFSEKLGWRMQKGDDGLVQEFCSDIGVSRGVFKVWMHNNKNTFRKRSEGGNNNTSNDDPQTGDHDDGNASGGGGGFDSDINNPYNPNSSNNDIHMKEDGCVDVHVSSLNEMSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1290 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 222 278 - -
Ssu5g1290 293 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Ssu5g1290 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 226 - -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 140 164 - -
Ssu5g1290 293 Gene3D - 154 225 - -
Ssu5g1290 293 SUPERFAMILY Homeodomain-like 158 225 IPR009057 -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 83 122 - -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 260 274 - -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 88 106 - -
Ssu5g1290 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 164 221 IPR006455 -
Ssu5g1290 293 MobiDBLite consensus disorder prediction 107 122 - -
Ssu5g1290 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 1 226 - -
Ssu5g1290 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1290 Ssu-Chr5 42090118 42090999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1290 1 223 ZF-HD Transcription Factor Family AT1G69600 48.485 1.81e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu5g1290 ZF-HD_dimer 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1290 - - vra:106766949 412.92