Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1289 ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCGGCACACGAGGAGGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGGCGGGATCCAACAAAGAGCGTTTGTATCAGAGTCACCGTGTGCGAAACATGATCGACACCATTACCTCTACCACTCAAAAGCTTATTGAGATATATGAAGATAACGACAATGCAAGGAAGGACGAGATTGCTGCACTCGGAGGTCAAACTGCCACCGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTCAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGCGTTGTTGATGCTAGCGATGATTATGAAGCACTTCTTAAAGAGGAACCTCAAATTGAGTTTAGTGGAgagGAAGCTCTTGGTCGATACTTAGACATGCATGAATTATATCATCAGTATATCAATTCTAAGTTTGGAGAGCCTATTGAGTATTCTGCATATCTTGATGTTTTCTCAGATACAGAAAAGATTCCCCGCAAAATGAAAATGACCAGGCAGTACCGAGAATATATGGAGAATCTTGTAGAGTATCTGTTATATTTTTTCCAGCGGATAGAGCCCTTGCAAGATCTTGATAGAATTTTCTCAAAGGTAACAActgaatttgaagaaaattggGCTGCTGGAAAGATGCAGGGATGGGAGAATGACAATCAGGAGAATGGACATGTACCTGGTCAGCATGCTATGATTGATCTTGATTATTATAGTACAATTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCGTTGGGGCTTAAGGCTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTTACAAAGCACACACCTCTTGAAAAGTTGGACAAGAAGCATTTTGCTAAGGGAGCACAAGGTTTAGAAAAAAATGGGGTGGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGCAGACGAAAATGAAAAAGCTGTGTGAATTGTTAGAAGAGACAATTGCTCGAACAAAAGACAACGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTGCCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAATGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCCTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACCAAGAACTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGACTTACAGCGCCAGGGACTAATATGA 1530 0.4275 MSSTVLEVTRAAHEEVERLERLIVKELQNEAGSNKERLYQSHRVRNMIDTITSTTQKLIEIYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDASDDYEALLKEEPQIEFSGEEALGRYLDMHELYHQYINSKFGEPIEYSAYLDVFSDTEKIPRKMKMTRQYREYMENLVEYLLYFFQRIEPLQDLDRIFSKVTTEFEENWAAGKMQGWENDNQENGHVPGQHAMIDLDYYSTIEELMEVGPERLKEALAALGLKAGGTVQQRAERLFLTKHTPLEKLDKKHFAKGAQGLEKNGVAAVPQEDGNSKEIALMQTKMKKLCELLEETIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1289 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 509 - -
Ssu5g1289 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Ssu5g1289 509 Coils Coil 353 380 - -
Ssu5g1289 509 MobiDBLite consensus disorder prediction 363 383 - -
Ssu5g1289 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Ssu5g1289 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Ssu5g1289 509 MobiDBLite consensus disorder prediction 363 382 - -
Ssu5g1289 509 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Ssu5g1289 509 PANTHER BNAA03G01920D PROTEIN 1 509 - -
Ssu5g1289 509 Pfam Replication stress response SDE2 C-terminal 223 304 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1289 1 509 C2H2 Transcription Factor Family AT5G06160 74.263 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1289 K12827 - gmx:100815393 929.087