Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1285 ATGGAAGAGAGAAATGATGTTGAGAAACTAGATGAGGTTATGCTCCCGGGTTTCAGGTTTCATCCAACAGACGAGGAGCTTGTTGGGTTTTACCTAAAGAGAAAGATTCAGCAGAGGCCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGACCGCCCTATATATTCCTCGGAGGGCTCTAAGTGTATTGGCCTCAAGAAATCCCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTCACTCATCCTCGTCCCCCAAGAAATACATGGACAGGACCATCCCTGCTAACGAATCCTGGGCAATCTGCAGGATCTTCAAGAAAACCAATGCCACTGCTCATAGAGCTCTCTATCACTCTTGGGTCTCTCCCTTACCTGAAACGACCACTTCTGATCATATGCTAACCACTGTTAGAGACGGCAACCAATTTTGTCCAGCAAACATGCCATTGACAAAGAAAACTAGCTTAACCAGCCAGTTTTGTACTTTTAATCACAATGACACCCAACACTTAACCACTACTAGTAGTACTCCTTGTCCTTTAGATGTTGTTGCCTCTTACAACAAACCAATTATTAATCCATTGCTTTACAAACCTTTAGATCTATTACCCATTTCAAATGGAGACCTTAGCACTGGCTTAATATTCTCATCTCCTCTTGAAACTTCCACAACCAGTGCCAAATCTTCAATGGATGTTTCTTCCTTGCTATTGAGTACATCACCTTCTGTGCTTGGAGAATTTAGTAAGACATCTGGGGGAATAACCACAAACTTTGGTGGGCTACAAGAGCATAGTAATGGCTACCAAATACCATTGCTACGTGACATGCAAGGGACCATTGGCAACCACGATGACAATGTAAAGATTCCTAATGTGAATGTGCCTCGTGTTGATGACCAACAATTGCAGACAGTAAGATCCATGGGGTTCCCATTCACTATGCCTTTCAATATTGGCGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCCTCTTTGTCCTTGTGA 1209 0.4351 MEERNDVEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTHSSSSPKKYMDRTIPANESWAICRIFKKTNATAHRALYHSWVSPLPETTTSDHMLTTVRDGNQFCPANMPLTKKTSLTSQFCTFNHNDTQHLTTTSSTPCPLDVVASYNKPIINPLLYKPLDLLPISNGDLSTGLIFSSPLETSTTSAKSSMDVSSLLLSTSPSVLGEFSKTSGGITTNFGGLQEHSNGYQIPLLRDMQGTIGNHDDNVKIPNVNVPRVDDQQLQTVRSMGFPFTMPFNIGDAWKSNLLWDTSSLSL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1285 402 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Ssu5g1285 402 PANTHER PROTEIN FEZ ISOFORM X1 1 400 - -
Ssu5g1285 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 400 - -
Ssu5g1285 402 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Ssu5g1285 402 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Ssu5g1285 402 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1285 Ssu-Chr5 41976791 41978814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1285 1 315 NAC Transcription Factor Family AT1G26870 56.667 1.02e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g1285 NAM 9.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1285 - - vun:114179488 688.337