Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1258 ATGGAAGGTGTTCGCCATCATCATCATGAAAACGTGACTCGGAAGCCCAATTTCCCTCTCCAACTGTTGGAGACAAAAGACGAGGCTGAGGAGCGGACTGAAGCGCCGGCGAAGAAGCCGGCGGCGAAGCGGCCGTCGACGAAGGACCGGCACAAGAAGGTGGAGGGACGGGGGAGGCGGATCCGGATGCCGGCGGCGTGCGCGGCGAGGGTGTTCCAGCTGACGCGCGAGCTCGGGCACAAGTTCGACGGCGAGACTATCGAGTGGCTGCTCCGGCAGGCGGAGCCCGCCGTGATCGCCGCCACCGGCACCGGCACCGTCCCCGCCAACTTCTCCTCGCTCAACGTCTCCCTCCGCAGCTCCGGCTCCACCCTCTCCTCCCCCTCCCTCCTCTTCAACCGCCACGACAACTACCCCCACCACCACCCCTTCGCCGCACCGCCACCCTTCTTCTCCTCCGCGGAAGATTCCAGAAGGTTCTCGTTCCCCGACGCCTCTGCTTTTTTAACTTCGGCGGCAACGCTAACGGTAACCTTCTTCAAGCCAGGCACGAGGAGGAGGAGGGTTTGGGTTTGGGGAGGAAGAGAAGGGAGGAGGAAGAGACGATTTCGCACGTGGGAAGCTGGTTGTCGCAGTCGACTACGGACTCCGTTCCCGCCATCATGGGTGGCGCCGATTCCGTTTGGGCCGTTCCCTCTGCGTCTTCTTCTGCGAGTGGCATTCATTTTGTGA 732 0.6284 MEGVRHHHHENVTRKPNFPLQLLETKDEAEERTEAPAKKPAAKRPSTKDRHKKVEGRGRRIRMPAACAARVFQLTRELGHKFDGETIEWLLRQAEPAVIAATGTGTVPANFSSLNVSLRSSGSTLSSPSLLFNRHDNYPHHHPFAAPPPFFSSAEDSRRFSFPDASAFLTSAATLTVTFFKPGTRRRRVWVWGGREGRRKRRFRTWEAGCRSRLRTPFPPSWVAPIPFGPFPLRLLLRVAFIL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1258 243 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
Ssu5g1258 243 Pfam TCP family transcription factor 46 137 IPR017887 -
Ssu5g1258 243 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 141 IPR005333 GO:0003700
Ssu5g1258 243 MobiDBLite consensus disorder prediction 1 60 - -
Ssu5g1258 243 PANTHER TRANSCRIPTION FACTOR TCP23 24 141 - -
Ssu5g1258 243 MobiDBLite consensus disorder prediction 24 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1258 Ssu-Chr5 41495367 41496098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1258 13 116 TCP Transcription Factor Family AT1G69690 69.298 1.08e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu5g1258 TCP 2.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1258 - - aprc:113860120 203.371