Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1254 ATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTACTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTTGCTGGATTCCTAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCATACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTCTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATGAATGAATCTGTTGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCCGAGTGTGTAATTGCATTGAGTATTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACATGTATATACAATGGGAAGTACAGCATATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTAAACGTGTTGAAGATAAAATTGCTGACTGTTTTGTCGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAGCAAGTGAAAAGTGTTGTTTGTGGTTCAAACTTTACTGCTGTTGTGTGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAGTCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAAGCATGCACCAGCAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCCGTATCGAGTTTGTGATGACTGTTatcttaaacttaaaaaagttgCTGAATCATTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGACAATAGAACCACTAAAATACAGGGAGCACTATTAAGGCTTTCATCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATCAAAGCTACCAGATTCACAAGATAGCCATCTTTTCCCAACTTTGAATGGAAAATTACAGATGAGGGATTTTGCTCCttcaaaatcatcaaattctCTTTCTGGGTATTCTAAGAAGCACCTTTCAGTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTACGAAGATATCAATGACGATTTAAAGCAcagaaatgatattttaagtCAAGAAGTTATAAGTTTAAGGACACAGGTTGAAGATCTTACTCGAAAGTCAAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTAAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGTCATTGACTGCACAGTTGAAGGAAATGGTGGAAATGGTGGAAAGACTGCCGGAAGGACATAATGCTGACTCCAGTACAGAGCACTGTGCTGAAACCACTAATAGTAATCTAGATCATTCCTTAGACGAGAGCCATATAAGAAACACTATCATCCCCAAAAATGAAAGCAGCAGCAATGTAGCAAGTCAGATATTACCTAATGGCACCAAAACAGAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCAGCCGGGTGGTGGTAATGAGCTTAGGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAACAAGCTGAGAAGTGGTGGGCCGAAAATGGAACCAAAGTATTGGAGCGACACAATGTAGTTGCTTTATAG 2043 0.4028 MNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGMLGHGNEVSCWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVACGVWHTAAVVEVMNESVESSTRSSSGRLFTWGDGDKSQLGHADREPRLVPECVIALSIENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPASDGKVPKRVEDKIADCFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVVCGSNFTAVVCLHKWIPSVDHSTCFGCRSPFNFRRKRHNCYNCGLVFCKACTSKKSIKASLAPNSNKPYRVCDDCYLKLKKVAESLPLVQTPSLRSVSLQDNRTTKIQGALLRLSSFGSILQTESSQSKLPDSQDSHLFPTLNGKLQMRDFAPSKSSNSLSGYSKKHLSVSEPAARISCQSTSPVSSKSSPRQSYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMVEMVERLPEGHNADSSTEHCAETTNSNLDHSLDESHIRNTIIPKNESSSNVASQILPNGTKTESGKAEWVVQDEPGVYVSLSSQPGGGNELRRVRFSRKHFTEEQAEKWWAENGTKVLERHNVVAL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1254 680 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 191 IPR000408 -
Ssu5g1254 680 MobiDBLite consensus disorder prediction 564 583 - -
Ssu5g1254 680 Gene3D - 1 131 IPR009091 -
Ssu5g1254 680 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Ssu5g1254 680 Pfam FYVE zinc finger 296 362 IPR000306 GO:0046872
Ssu5g1254 680 Pfam Regulator of chromosome condensation (RCC1) repeat 75 123 IPR000408 -
Ssu5g1254 680 Pfam Regulator of chromosome condensation (RCC1) repeat 139 188 IPR000408 -
Ssu5g1254 680 Pfam Regulator of chromosome condensation (RCC1) repeat 19 70 IPR000408 -
Ssu5g1254 680 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Ssu5g1254 680 Pfam Regulator of chromosome condensation (RCC1) repeat 245 292 IPR000408 -
Ssu5g1254 680 SUPERFAMILY RCC1/BLIP-II 2 297 IPR009091 -
Ssu5g1254 680 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 674 - -
Ssu5g1254 680 Coils Coil 537 557 - -
Ssu5g1254 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 368 IPR013083 -
Ssu5g1254 680 Pfam Transcription factor regulating root and shoot growth via Pin3 620 675 IPR013591 -
Ssu5g1254 680 MobiDBLite consensus disorder prediction 456 475 - -
Ssu5g1254 680 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 75 126 IPR000408 -
Ssu5g1254 680 MobiDBLite consensus disorder prediction 455 481 - -
Ssu5g1254 680 ProSiteProfiles BRX domain profile. 621 676 IPR013591 -
Ssu5g1254 680 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 20 74 IPR000408 -
Ssu5g1254 680 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 113 123 IPR000408 -
Ssu5g1254 680 SMART fyve_4 292 363 IPR000306 GO:0046872
Ssu5g1254 680 Pfam Transcription factor BRX N-terminal domain 532 556 IPR027988 -
Ssu5g1254 680 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 674 - -
Ssu5g1254 680 Coils Coil 474 529 - -
Ssu5g1254 680 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 244 295 IPR000408 -
Ssu5g1254 680 SUPERFAMILY FYVE/PHD zinc finger 296 371 IPR011011 -
Ssu5g1254 680 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 300 362 IPR017455 -
Ssu5g1254 680 Gene3D - 133 303 IPR009091 -
Ssu5g1254 680 PRINTS Chromosome condensation regulator RCC1 signature 110 123 IPR000408 -
Ssu5g1254 680 PRINTS Chromosome condensation regulator RCC1 signature 246 260 IPR000408 -
Ssu5g1254 680 PRINTS Chromosome condensation regulator RCC1 signature 230 246 IPR000408 -
Ssu5g1254 680 PRINTS Chromosome condensation regulator RCC1 signature 76 92 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1254 Ssu-Chr5 41424728 41432045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1254 617 677 Major Intrinsic Protein MIP AT1G31880 49.180 2.31e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1254 - - lang:109355968 978.008