Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1251 ATGTCTAGCAGAAGATCCCGTTCGAGACAGTCAGGTGTTTCCACTGAGATCACTGATGCTCAGATTACTGATCTCATTTCCAAGTTACAACAACTTATCCCTGAGCTACGCGCAAGACGTTCCGACAAGGTTTCAGCTTCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCACAGAGAGGTTGATGACCTAAGTGACCGGTTGTCACAACTTTTGGCCACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATgtaa 282 0.4574 MSSRRSRSRQSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1251 93 Coils Coil 57 77 - -
Ssu5g1251 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
Ssu5g1251 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ssu5g1251 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Ssu5g1251 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Ssu5g1251 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Ssu5g1251 93 CDD bHLH_AtPRE_like 17 77 - -
Ssu5g1251 93 Gene3D - 19 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1251 Ssu-Chr5 41251458 41252240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1251 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 6.72e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1251 HLH 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1251 - - gmx:100791371 171.014