Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1248 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCTAATGCCGAGGAAGATTTGTCTGATGATGGATCACAGGCaggagagaagaaaaggaggCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTTCAGAACAGGAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAGCTTCAGACtgagATTTTGGCACTGAAAAGCAGAGAACCAACTGAATCCATCAACCTCAATAAGGAAACTGAGGGCTCCAGCAGCAACAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACTCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAACCCTCTTTCCACCTTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACTACTTCAAGGCCAGACCTTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGCATTGATGATCAATCTGGCCTATGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 837 0.4361 MAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRTLFPPSARPTGVAQLFQTTSRPDLQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1248 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 278 - -
Ssu5g1248 278 MobiDBLite consensus disorder prediction 175 225 - -
Ssu5g1248 278 MobiDBLite consensus disorder prediction 178 225 - -
Ssu5g1248 278 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Ssu5g1248 278 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Ssu5g1248 278 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Ssu5g1248 278 CDD homeodomain 75 131 IPR001356 GO:0003677
Ssu5g1248 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 278 IPR045224 GO:0003700
Ssu5g1248 278 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Ssu5g1248 278 SMART HOX_1 73 134 IPR001356 GO:0003677
Ssu5g1248 278 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Ssu5g1248 278 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Ssu5g1248 278 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Ssu5g1248 278 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g1248 278 Coils Coil 122 170 - -
Ssu5g1248 278 MobiDBLite consensus disorder prediction 58 77 - -
Ssu5g1248 278 Gene3D - 67 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1248 Ssu-Chr5 41127139 41128881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1248 1 278 Homeobox Transcription Factor Family AT1G69780 63.390 3.43e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g1248 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1248 K09338 - gmx:100801479 530.406