Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1246 ATGCAAGATATGACGCAGCAGCACCAGAAGCAGCAGTGCAACGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGAGTCAAGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGACTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGctcaaaaaatatttggtaaCAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTgcagaaagagagaaaaatatgcaGCTTTAGCAAAAGAGAACAGCGCTTCATACATCAATTCAAATAACAAGAAGATTATGCTCcaacattataataatatggaTACAACATCAGAATCTGGAGTACCTATTAAGAAGACGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGATCAACTTTGGGGACCGATCACATTTACGAAATGGAACTCCAACAAATCAGCAGCCAAGAGCACCATTTGCAGTATTAACTCAAAATTCCCATAACATAAACAACTTGCCAGACCAGCATCAAGTTTGCAATCCCAAGTTTAACAGTTTCGCCCAAAATAACAAGATTCAAGGAACATTCCTCAAAAAGGATGACCCGAAGATAAGTGCATTGATGCAACAGGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAACTGCATGGAAGGTTCTCCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATCCCTGGACATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGGTATAATTGAGGACTTGAAGAGCGGTAATGAGGAAAGCCAGGCTTGTTGGAGGCAAGTGGAATGTTACAAAGACTCTCCAGGAAGTTCTGGATACAGTGCAGGATCAACTCTCCTGTGTCAGTCAGCTGGTGATAATTTGGAGCACTCATTGCATCAGGATATTGGAACTGAAATGAAATCTGAACAATTTGGAGATGAAAAAGGAGTAGGTAGAGATGAGAAAGGGATTCTTTCTACTGCAAATGTAGATCAAGATATGCTATCATATTGTGAGGAACAGATAAACAATGATGGGACTGTTTCTACCTCATCAAGGTTGGGGTTCAGCTCCCCTCTTCAAGTAACCCCTCTCTTCAGAACCTTGGCGGCAGGAATTCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAATGGAATCTCCATCCAGCAACCCAAGTGCCAACTCATCACAACCACCACCCTGCAAAAGAGCCCTACTACCTAGTCTATAA 1428 0.4034 MQDMTQQHQKQQCNEESKKKERHIVTWSQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKYAALAKENSASYINSNNKKIMLQHYNNMDTTSESGVPIKKTRRAHIPDDAEKINFGDRSHLRNGTPTNQQPRAPFAVLTQNSHNINNLPDQHQVCNPKFNSFAQNNKIQGTFLKKDDPKISALMQQAELLSSLALKVDTENMDQSLETAWKVLQEFLNRTKESDIPGHKIPDLQLVDLKGIIEDLKSGNEESQACWRQVECYKDSPGSSGYSAGSTLLCQSAGDNLEHSLHQDIGTEMKSEQFGDEKGVGRDEKGILSTANVDQDMLSYCEEQINNDGTVSTSSRLGFSSPLQVTPLFRTLAAGIPSPQFSESERNFLRKTLGMESPSSNPSANSSQPPPCKRALLPSL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1246 475 CDD SANT 26 70 IPR001005 -
Ssu5g1246 475 SUPERFAMILY Homeodomain-like 23 117 IPR009057 -
Ssu5g1246 475 MobiDBLite consensus disorder prediction 448 475 - -
Ssu5g1246 475 Gene3D - 78 153 - -
Ssu5g1246 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Ssu5g1246 475 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g1246 475 SMART sant 75 123 IPR001005 -
Ssu5g1246 475 SMART sant 23 72 IPR001005 -
Ssu5g1246 475 PANTHER TRANSCRIPTION FACTOR MYB88 10 472 - -
Ssu5g1246 475 CDD SANT 79 120 IPR001005 -
Ssu5g1246 475 PANTHER MYB PROTEIN-RELATED 10 472 - -
Ssu5g1246 475 Gene3D - 13 75 - -
Ssu5g1246 475 Pfam Myb-like DNA-binding domain 27 87 - -
Ssu5g1246 475 ProSiteProfiles Myb-like domain profile. 27 70 IPR001005 -
Ssu5g1246 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Ssu5g1246 475 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Ssu5g1246 475 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1246 Ssu-Chr5 41034047 41038908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1246 65 475 MYB Transcription Factor Family AT1G14350 52.657 5.90e-133 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1246 Myb_DNA-bind_6 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1246 K09422 - gmx:100807667 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1246 5 41034047 41038908 Ssu2g1625 2 64741139 64745071 PCT