Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1245 ATGGGTAACTGCCTAGATTCTTCAGCTAAAGTAGAAGCAGCTCACTGTTCCCGAACCCCTTCTGGAATTTCAAAAACAAGTCCTTCCAACTTATCTATTCTGTCATACAGTGAAACAAGTGATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTCAATGAGCTGAAGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGTGAGGGAGGATTTGGTTATGTTTACAAGGGTTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAATTTCACCATCAGAATCTGGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTGGAGAACCATCTGTTTAGAAGAGGACCACAGCCTCTATCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGCGGactctcttttcttcataatGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTAGACGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCATGGGTACTCAGGGATATGCAGCACCTGAATATGTGGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTATTGTCCGGTAGACGTGCCGTTGACAAAGCAAAAGGTGGTGTAGAGCAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAGACTATTTCGGATCATGGACACCAAGTTGGGAGGCCAATACCCCCAAAAAGGAGCCTACATGGCTGCTACTCTTGCTCTAAAGTGCCTTAATCGCGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACTCTTGAAAAGATTGAAGTCTCAAAAACAGCAGGGAGAAACTCCCAATTAGAACAGAAGAGAGTCCATGTTCCTGTCAGAAAGTCTCCTGCACAAAATGGGTCCCCTTTGAATCGTACTCCTACTGCATTCCCACTGCCATCTCACCCACAATCTGCTTGTGTACACTAA 1230 0.4447 MGNCLDSSAKVEAAHCSRTPSGISKTSPSNLSILSYSETSDASSLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQFHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAASGLSFLHNAKSQVIYRDFKASNILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKAKGGVEQNLVEWTKPYLGDKRRLFRIMDTKLGGQYPQKGAYMAATLALKCLNREAKARPPMTEVLETLEKIEVSKTAGRNSQLEQKRVHVPVRKSPAQNGSPLNRTPTAFPLPSHPQSACVH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1245 409 MobiDBLite consensus disorder prediction 363 409 - -
Ssu5g1245 409 PANTHER OS01G0588500 PROTEIN-RELATED 10 406 - -
Ssu5g1245 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Ssu5g1245 409 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Ssu5g1245 409 SUPERFAMILY Protein kinase-like (PK-like) 48 355 IPR011009 -
Ssu5g1245 409 Pfam Protein tyrosine and serine/threonine kinase 79 355 IPR001245 GO:0004672|GO:0006468
Ssu5g1245 409 CDD STKc_IRAK 81 358 - -
Ssu5g1245 409 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
Ssu5g1245 409 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 10 406 - -
Ssu5g1245 409 MobiDBLite consensus disorder prediction 384 400 - -
Ssu5g1245 409 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Ssu5g1245 409 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1245 Ssu-Chr5 41017228 41020678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1245 51 355 Glycoside Hydrolase AT3G07070 52.597 5.62e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g1245 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1245 - - gmx:100305401 744.577