Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu5g1244 | ATGTCGACATCGACGAACGTGGTGGTTCTAGACAACGGCGGCGGGCTGATCAAGGCGGGCCTGGGCGGCGAGCGCGACCCCTCGGCCATCGTCCCTAACTGTCTCTACCGCCCGCCGGCGTCCAAGAAATGGCTCCACCCGAACTCCTCCGGCGAGCAGGACCTAACCTCGGCCGCCGTGCGCCGCCCCGTGGACCGCGGGTACCTGATAAACCCGGACCTGCAGCGCGAAATCTGGTCTCACCTCTTCTCCTCCGTCCTGCGCATAACCCCGTCGCACTCCTCCCTCCTCCTCACGGAACCCCTCTTCACGCTCCCCTCCATCCAGCGCTCCCTCGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTCTGCGTGGCCCACCCCCCCTCCCTCGTCCACCTCCACGAGGCCAGCCGCCGGCCCAGCGGGCTCCTCTCCAAGGCCCAGTGTAGCCTCGTCGTCGACTCCGGGTTCTCCTTCACCCACGCCTCCCCCGTCTTCCACAACTTCACCCTCAGTTACGCCGCCAAGAGGATCGACCTCGGCGGCAAGGCCCTCACCAACTACCTCAAGGAGCTCGTCTCCTTCCGCTCCGTCAACGTCATGGAAGAGACCTTCATCATTGACGACGTCAAGGAGAAGCTCTGCTTCGTCTCCCTCGATGTCAACCGCGACCTCAACATCGCTAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTATGTGCTTCCAGATGGTGTTACATACACAAAGGGGTTTGTTAAGTATCCAGATCAGGCACGGCGGTATCTTGCATTGAGGGAGGGTGGCCTTCCTTCTTCACCGCTAGTAGAGGCAGAGGGGGATATGAATTGCCAGGAAATTGCCGAGCAGCCGAGGACAGGAAGAGAATTGATTTGA | 909 | 0.6117 | MSTSTNVVVLDNGGGLIKAGLGGERDPSAIVPNCLYRPPASKKWLHPNSSGEQDLTSAAVRRPVDRGYLINPDLQREIWSHLFSSVLRITPSHSSLLLTEPLFTLPSIQRSLDELVFEDFNFRALCVAHPPSLVHLHEASRRPSGLLSKAQCSLVVDSGFSFTHASPVFHNFTLSYAAKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVNRDLNIARKSGKENLFRCTYVLPDGVTYTKGFVKYPDQARRYLALREGGLPSSPLVEAEGDMNCQEIAEQPRTGRELI | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu5g1244 | 302 | CDD | NBD_sugar-kinase_HSP70_actin | 8 | 195 | - | - | |
| Ssu5g1244 | 302 | PANTHER | ACTIN-RELATED PROTEIN 6 | 8 | 266 | IPR030054 | GO:0005634|GO:0006338 | |
| Ssu5g1244 | 302 | PANTHER | ACTIN | 8 | 266 | IPR004000 | - | |
| Ssu5g1244 | 302 | SMART | actin_3 | 5 | 302 | IPR004000 | - | |
| Ssu5g1244 | 302 | Gene3D | Actin; Chain A, domain 4 | 189 | 248 | - | - | |
| Ssu5g1244 | 302 | SUPERFAMILY | Actin-like ATPase domain | 151 | 256 | IPR043129 | - | |
| Ssu5g1244 | 302 | SUPERFAMILY | Actin-like ATPase domain | 3 | 134 | IPR043129 | - | |
| Ssu5g1244 | 302 | Gene3D | - | 128 | 188 | - | - | |
| Ssu5g1244 | 302 | Gene3D | - | 8 | 127 | - | - | |
| Ssu5g1244 | 302 | Pfam | Actin | 4 | 253 | IPR004000 | - | |
| Ssu5g1244 | 302 | Gene3D | Actin; Chain A, domain 2 | 35 | 63 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu5g1244 | Ssu-Chr5 | 40971693 | 40973990 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu5g1244 | 8 | 259 | Cytoskeleton Gene Families | AT3G18780 | 30.268 | 5.08e-34 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu5g1244 | K11662 | - | gmx:100819827 | 507.679 |