Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1243 ATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCGGAATGCATTGTGCGAGCTGTTAATGCTTGCCATCCGCTTCTCCACCCTGTACTCTACGAAAGCATCATATTAACAGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGATTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCATGTGAAGATAACTACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGGTCACTGTTGGCATCAAGTCCAGATTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 354 0.4605 MIFRPADLGMNQAGLAECIVRAVNACHPLLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1243 117 Gene3D - 13 79 - -
Ssu5g1243 117 Pfam Actin 1 116 IPR004000 -
Ssu5g1243 117 Gene3D - 80 108 - -
Ssu5g1243 117 PANTHER ACTIN 2 111 IPR004000 -
Ssu5g1243 117 PANTHER ACTIN, CYTOSKELETAL 2A 2 111 - -
Ssu5g1243 117 SUPERFAMILY Actin-like ATPase domain 1 116 IPR043129 -
Ssu5g1243 117 Gene3D Actin; Chain A, domain 4 1 12 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1243 Ssu-Chr5 40970817 40971562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1243 1 116 Cytoskeleton Gene Families AT5G09810 35.345 1.49e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1243 K11662 - gmx:100819827 234.187