Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1241 ATGGGAAGACAAAGTCCTGGAAAATGGATCAGAAACTTACTTCTGGGGAAGAAATCATCATCAAAGTCTAAGTCTTCTAGAGAGAAAGATATTTATAATCCATCAAGTGACAAGGATGTTCTGGTGGTGTCTTCCGAGGCACCCATGTCTATTCCAACATCTGGAGCAAATGCTACCAAAGGAGTGCTATCAGAACAGGAAGTAGTTGGTATATCATCAAATGATGGGGTAATTCTTTCAACTGGAGATGAACAAGCCAGTGCACAATCTCTTGCAAATTTTGATTCTGGGGACCATCATGAGAAAATCAGGCAAATAGAAGCAGCTATAATAGTTCAGGCTGCTATTAGAGGCTATCAGGCGCGTGGGACATTTAAAACTCTCATAGGTATCATACCTCTGCAAGCTTATATTCGTGGCCAGTTGGTTCGGCGACAAGCTATTTCTGCATTATATTGTGTGAAATCAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAAGGTTAGGCACTCTGATATTGGGCTTGCAGTCCAGAAAATTTTTAAGGATACTAAATTTCCGAATTCTGTTGGAGTAGTTACATCCACACAGGCAGCGAAGCTCTCAGATAATATCTTTGTTCACAAACTTCTGGCTTCATCACCCTCTGCTGTTTCTCCATATCTCAAATATAATGCTGGTGAACCTAACTTGGCTTGGGAGTGGCTTGACCGCTGGACGAAATCACACTTTTGGGTACCTCTTCCAGAAGCGAAGAAACCTGATTCAATATCTGATAAGAAAAATGGCTCTTGTCAAACAATTGAAGCTAATGAGGCACAAGTCAAAAGAAATGCCAGGAAAGCACCTGCTGTGAGGGTTGGTGATGATTTAGTTTCAGATTCTAACAAACATAAACGGTATCCGAAAAAGGATTCAAACCTCCCATTGTATTCAGCTAAGGAACATCCACAAAAGGAACTTGAGAAAAGGAGTTTTAAAACAACTCAAATTCAGAATGGTTCTGATAAATCCGAGGTTGCTACTAAGAAAAGAACTCACATCACAAGAAAAGTTTCAGATCATGCAGTCAATGATGTTCCAGAGGAAGATGCTAGTGCTTCTTCAGAGAAGATGAAAGATTTGGCAGTGTCAAAGTCAAAAGAGTCTGATCTTGAGAAAAGTCTTGGACAGCAAGCAGAAGAGCATGATAATGAGTCATGTAATGATACTGATGCTCACTTGCATTCTAGCTTGATGAATGGTAAAGATGGAGGAGTCATTGAGGACTTGAATGTTGGTGACAATTGCATCAGCAATGTAAATTCTAAGAATATCCATAGAAGAGCTTCCCTGCCTGCTAATTTTATGGATCATGAAAATCTGTTGCGTAATAACACTCCAAGACTAATTCCCAGTTATATGGCTCCCACTGAATCTGCAAAAGCTAAGCTAAGAGGACAAGGCTCTCCAAGATCTGCTAGTGATTTGGCAGACACAAATAGTATAACCCGGCGGCTTTCACTTTCATCTTCGTTTAGTAGCAAGGTAGGTTCATTCTCTCCACGAGCAGATAGATTGGCAGCCTTGAGCAGCAAAGGAGTGATAAGGACTGACAGATCTCTATCGTCTTCAAGGGGTGGGACTGGTAAGAATTTAGGATTTTGCTCGTTTTTCTCTTTACTTTATCATCTATTGATGATTCAATTGATGGTTAATTTGTAA 1707 0.4019 MGRQSPGKWIRNLLLGKKSSSKSKSSREKDIYNPSSDKDVLVVSSEAPMSIPTSGANATKGVLSEQEVVGISSNDGVILSTGDEQASAQSLANFDSGDHHEKIRQIEAAIIVQAAIRGYQARGTFKTLIGIIPLQAYIRGQLVRRQAISALYCVKSIVKFQALARGYKVRHSDIGLAVQKIFKDTKFPNSVGVVTSTQAAKLSDNIFVHKLLASSPSAVSPYLKYNAGEPNLAWEWLDRWTKSHFWVPLPEAKKPDSISDKKNGSCQTIEANEAQVKRNARKAPAVRVGDDLVSDSNKHKRYPKKDSNLPLYSAKEHPQKELEKRSFKTTQIQNGSDKSEVATKKRTHITRKVSDHAVNDVPEEDASASSEKMKDLAVSKSKESDLEKSLGQQAEEHDNESCNDTDAHLHSSLMNGKDGGVIEDLNVGDNCISNVNSKNIHRRASLPANFMDHENLLRNNTPRLIPSYMAPTESAKAKLRGQGSPRSASDLADTNSITRRLSLSSSFSSKVGSFSPRADRLAALSSKGVIRTDRSLSSSRGGTGKNLGFCSFFSLLYHLLMIQLMVNL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1241 568 MobiDBLite consensus disorder prediction 292 306 - -
Ssu5g1241 568 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 542 - -
Ssu5g1241 568 ProSiteProfiles IQ motif profile. 130 156 IPR000048 GO:0005515
Ssu5g1241 568 SMART iq_5 127 148 IPR000048 GO:0005515
Ssu5g1241 568 SMART iq_5 152 174 IPR000048 GO:0005515
Ssu5g1241 568 SMART iq_5 104 126 IPR000048 GO:0005515
Ssu5g1241 568 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Ssu5g1241 568 MobiDBLite consensus disorder prediction 12 34 - -
Ssu5g1241 568 Pfam IQ calmodulin-binding motif 134 146 IPR000048 GO:0005515
Ssu5g1241 568 Pfam IQ calmodulin-binding motif 107 122 IPR000048 GO:0005515
Ssu5g1241 568 Pfam IQ calmodulin-binding motif 155 170 IPR000048 GO:0005515
Ssu5g1241 568 MobiDBLite consensus disorder prediction 472 493 - -
Ssu5g1241 568 ProSiteProfiles IQ motif profile. 105 129 IPR000048 GO:0005515
Ssu5g1241 568 Pfam Protein of unknown function (DUF4005) 458 531 IPR025064 -
Ssu5g1241 568 MobiDBLite consensus disorder prediction 275 411 - -
Ssu5g1241 568 MobiDBLite consensus disorder prediction 339 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1241 Ssu-Chr5 40851661 40856333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1241 1 540 IQD Protein Family AT2G02790 34.276 1.42e-68 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1241 - - gmx:100800688 794.267