Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1239 ATGGCATGTAGCTCTGCGCTAACATTTGTGGATATCTCATGCAACCTTTTGGTTGGAAAATTGTCATCTTGCTTTGGTTCAATGTCTTCAAAGGCCACAGTACTATATTCTGGGAATTGTTTGTCAATCAAAAAGTTAAATGATCAACAACATCCATCTTCTTATTGCAAGAAAGAGCAGGCTTTGGCTGTTAAGCCTCCAGCTAAAAAGTTGAAGAAGGAATCGGATTTGGGTACGAAACTAGGCCTAGTTATTGGAATAATTGGAGGAGTTGTTGTGACTGCACGACTTCTGGTCCTACTCATTGTGTTCATCTTTAGGAAGTACAGAGCAGAAAGATCACATTATAAATTGGACAAATCTGTTGGTAATAAATATTCTGCCCGTGCATCTCCTAGACCAAATAATGGACATATTCCTCAGGCAATGAAGCAAGCTGCACTTGGACTGCCACCATACCGTATTTTCACATCAGAGGAAATTGAAGACGCAACAAACAACTTTGACCCATCAAATTTAATAGAAGAGGGATCACAAGGacagcTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTtgttaattgtgtaaaaataaaGCAGAAAGGTTTGCCCCACAGCATTATGAAGCACATAGAGGTATTACCCAATTTGAGGCACAGGCATATGGTGAGTGTTCTAGGACACTGTATCATTACTGAACAGGACCATCCCCAAACAACAAGCACAGTCTTCATTGTATTTGAGCACATCTCAAATGTATTGGAGAAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCGCAATCAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAGTTGCTCCTGGCATATATGGAAACAGTTTAAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTCAGTAGATACAACATTCCATTGCCATCCAAGAGTGCACATAATGAACAAACTGTCACCAATCATATTGGCAGCACAAACACTGCAGAAAAGGAAGACATCTATGAGCTAGGTGTTATTTTACTTGAAGTTATCACTGGCAAACAAATTGCATCCTCAAGTGAAATAGAGGAGCTGAAGGATGAGCTGGAGAGAGGTTCATCAGAAGCAGCATCAATACTTAGAAGCGCAATTGATCCTTCACTGAGGGGAACTTATGCATATGAATCAATGAGGACTGCAGTTCAGATTACCATCAACTGCCTCTCCAAGGTTTCTAGCCAGCGCCCTTCAATAGAGGATGTTCTTTGGAATTTACAGTACTCAATGCAAGTTCAAGAGTCGTGGACCAGCAGCGGAAACCTCAGCACAAAATTGTAA 1347 0.4053 MACSSALTFVDISCNLLVGKLSSCFGSMSSKATVLYSGNCLSIKKLNDQQHPSSYCKKEQALAVKPPAKKLKKESDLGTKLGLVIGIIGGVVVTARLLVLLIVFIFRKYRAERSHYKLDKSVGNKYSARASPRPNNGHIPQAMKQAALGLPPYRIFTSEEIEDATNNFDPSNLIEEGSQGQLYKGWLRDGSVVLVNCVKIKQKGLPHSIMKHIEVLPNLRHRHMVSVLGHCIITEQDHPQTTSTVFIVFEHISNVLEKEGNAEMATKNGAISIGIARGVQFLHTGVAPGIYGNSLKIENILLDDSLNAKVSRYNIPLPSKSAHNEQTVTNHIGSTNTAEKEDIYELGVILLEVITGKQIASSSEIEELKDELERGSSEAASILRSAIDPSLRGTYAYESMRTAVQITINCLSKVSSQRPSIEDVLWNLQYSMQVQESWTSSGNLSTKL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1239 448 Gene3D Transferase(Phosphotransferase) domain 1 253 443 - -
Ssu5g1239 448 Coils Coil 365 385 - -
Ssu5g1239 448 PANTHER OS07G0166700 PROTEIN 7 441 IPR045272 GO:0004714|GO:0006468
Ssu5g1239 448 Pfam Protein kinase domain 174 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1239 448 Gene3D Phosphorylase Kinase; domain 1 135 239 - -
Ssu5g1239 448 ProSiteProfiles Protein kinase domain profile. 168 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1239 448 SUPERFAMILY Protein kinase-like (PK-like) 149 428 IPR011009 -
Ssu5g1239 448 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 7 441 - -
Ssu5g1239 448 SMART serkin_6 168 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1239 Ssu-Chr5 40773353 40775728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1239 1 448 Miscellaneous Gene Families AT3G03770 39.056 1.67e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Ssu5g1239 Pkinase 3.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1239 - - gmx:100789785 703.36