Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1238 ATGCAGGATCGTAAGCTTAAAAGGGAAATGGGAGAAGTTGGAGAAGGAAACGATAGCTTGAAACCTTCACTGGCACGGCTTGTAAAGGATACAACTAGCGATGAAGAAAGTGAACTTGTCTCCCTTTCTCTTGGAATTTCATCCACAGGCCAacataagaagaagaagaatagaaaTGAAAAGATCAAAGAAAATGGGGACTTGAAAGATGGACTTGCACTTGGGTTAGATAACAGATATGACCCTTCAGCTATAAAAAATCCGAGCACTGAAAGTATCTATGATGGGGGAAGGAAGGAAGAGGAACTGAGAGAGATGTGGCCACCCAGTAAAGTTCCCAAGACGACAAGAACTGGGGATAAAAGTGAAGCTTCTCAACATGCTGAACCCAAGAAGACTAGGGTTTGTATTAGAACCAGAAGTGATACCCTTACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCGTGCCCACGAGCTTATTATCGATGCAGTGTCTCTCCATATTGTCCTGTCAGAAAACAGGTTCAAAGATGTGCTAAGGACATGTCAATCTTGATTACCACCTATGAAGGAACCCACGATCACCCACTTCCTACTTCAGCCACTGCCATAGCCTACACAACTTCTGCAGCTGCTTCCATGCTTCAGTCTCCCTCATTGAGCTCACAACTAGGACCAGCCAATTCAGATACAGTCCCCCTCATCAATTCTAGTGTTCCTTATAACCTTAATGCCCTAAACTTCACATCAATCTATCAGCAGTTTTCCAAATCACAACAATTATACTTCCTCAACACATCTATTTCAACCTCTAGTTCTCACCCCACAATCACTCTTGACCTTACCACACCTCAAACTTCACCTCATGTTGGAAAATTCACCCCAGGCCTGTCTTCTATACCAAAATATTCACCAACAAATCTTGATTTTTCCTCAAGTAATTTCTCTCCTTTGCAATCTAGTATGCTACAGTCACCTTGGAGTCCTTATAGTGATTACTTCAACCATGAGAGATTGATCACCCAAAATAGAAACCAAAGTGGTTCCCTTATGAACACTGGAAAACAACCATTTCAGGGGCATCTCTGTCAACCTAATTACATTAGCAACCATGCCATTTCTCAACAATCTTTATCTGATTCCGTCGTAGCTGCAACCGAGGCAATCACAGCTACCCCAAAATTTCAATCAGCATTAGCAGCCACCCTAGCAGCATATGTTGGTAACAGGGTAAGAGAAAATCATGTTGGGGCCGAGAGTGCAGTTTTGGACTCAAATCTAGGTGGAGATATGCCATATGCAACAAACACAGTTTACACTTCTAATGCATCAAGGTACAAGAGAATGTCATCTTCTGCTCCTAATGCTCCAAAAAGAAACTCGGTCATATTTCAGCCATCACAAACATCTAAAAGTTCCTTTGGATCATCATCTAATAAAAGTAACCGATTCTTAGACCAATAG 1491 0.4131 MQDRKLKREMGEVGEGNDSLKPSLARLVKDTTSDEESELVSLSLGISSTGQHKKKKNRNEKIKENGDLKDGLALGLDNRYDPSAIKNPSTESIYDGGRKEEELREMWPPSKVPKTTRTGDKSEASQHAEPKKTRVCIRTRSDTLTMNDGCQWRKYGQKMAKGNPCPRAYYRCSVSPYCPVRKQVQRCAKDMSILITTYEGTHDHPLPTSATAIAYTTSAAASMLQSPSLSSQLGPANSDTVPLINSSVPYNLNALNFTSIYQQFSKSQQLYFLNTSISTSSSHPTITLDLTTPQTSPHVGKFTPGLSSIPKYSPTNLDFSSSNFSPLQSSMLQSPWSPYSDYFNHERLITQNRNQSGSLMNTGKQPFQGHLCQPNYISNHAISQQSLSDSVVAATEAITATPKFQSALAATLAAYVGNRVRENHVGAESAVLDSNLGGDMPYATNTVYTSNASRYKRMSSSAPNAPKRNSVIFQPSQTSKSSFGSSSNKSNRFLDQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1238 496 MobiDBLite consensus disorder prediction 454 496 - -
Ssu5g1238 496 MobiDBLite consensus disorder prediction 116 133 - -
Ssu5g1238 496 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g1238 496 ProSiteProfiles WRKY domain profile. 141 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1238 496 PANTHER WRKY TRANSCRIPTION FACTOR 72B 3 482 - -
Ssu5g1238 496 Pfam WRKY DNA -binding domain 147 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1238 496 Gene3D WRKY domain 131 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1238 496 MobiDBLite consensus disorder prediction 1 133 - -
Ssu5g1238 496 SMART WRKY_cls 146 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g1238 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 482 IPR044810 GO:0003700
Ssu5g1238 496 SUPERFAMILY WRKY DNA-binding domain 138 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g1238 496 MobiDBLite consensus disorder prediction 93 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1238 Ssu-Chr5 40611700 40615272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1238 69 431 WRKY Transcription Factor Family AT5G15130 38.120 9.94e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g1238 WRKY 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1238 - - gmx:102666229 715.687