Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1237 ATGTCGAACCTGCAGTTACAGCTTCACTCACCACCATCACtcttatcatcatcatcttcatcactatcttcttcttcttcctcccttAAGCTATTCCCAAACCACTCTTTCTCCCCAAAGTCCCTTCCTTTCAACACTCCTAAACCCTTCTCCCTCAGATGCCGCCGCTCTGACCTCTTCGACCAGAACACCTTAGCCTCCACATCACGACCCATAAGACCCACCGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGAAAGGCTGCGCTTACATTGACTCCTAGGCCCCCAGAATTCGCACCGCTGGatTCAGGGGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCTGTTGGTGTGCGCCAATATGATTGGAATAGAAAGCAAGTGTTTTCCCTATCGGTGGGTGAAATGGGAAGTGTGATGAGCCTTGGTGCAAAGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGTAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGTTTGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTGAACGTGGATGAAAGCATCTTTATCCCTGTTACGAAAGCTGAGTTAGCAGTTTTGAGCTCAACTTTCAATttTATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGATGATTATAGTGAAACGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 804 0.4241 MSNLQLQLHSPPSLLSSSSSSLSSSSSSLKLFPNHSFSPKSLPFNTPKPFSLRCRRSDLFDQNTLASTSRPIRPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFAPLDSGAYKISKEGYVLLQFAPAVGVRQYDWNRKQVFSLSVGEMGSVMSLGAKESCEFFHDPLKGKSDEGKVRKVLKFEPLPDGSGHFFNLSVQNKLVNVDESIFIPVTKAELAVLSSTFNFIMPYLLGWHTFANSIKPDDYSETNNANPRYGGDYEWNR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1237 267 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 4 267 - -
Ssu5g1237 267 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 4 267 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ssu5g1237 267 Pfam Whirly transcription factor 91 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ssu5g1237 267 Gene3D Transcriptional Coactivator Pc4; Chain A 78 256 IPR009044 GO:0003677|GO:0006355
Ssu5g1237 267 SUPERFAMILY ssDNA-binding transcriptional regulator domain 83 267 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1237 Ssu-Chr5 40570338 40573136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1237 6 267 Whirly Transcription Factor Family AT1G14410 62.977 4.40e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Ssu5g1237 Whirly 1.4e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1237 - - gmx:100789252 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1634 2 64960527 64964034 Ssu5g1237 5 40570338 40573136 PCT