Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1236 ATGATTTCCAACCAAGTTCACGTGTTCCGCTCTCCATTCCCCGTTCTGAAATATCCATGCTCAAAGCCACCAAACACGCGTCTCTTGTTTTTGCTTCATGCCAACACAAACGCTACCCTCTTGCCCTCACCAACCATCCTCTGTTCATCACTCAGTGACGACTCCTTTTCCACCCCAAAGCCAAACCAGTTCGGTTACAATCCTCCAGAGGAACTGTTCGGGCTGGAGGTGGAACTCAAACCAAGCAAGGCTAATTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATTGATGAACAACCATGGGAGAGAGCCCGTTCTATTTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCtagatgttaagaaaaaatccaAGCGTGTTTACCAATCACCACCTCCAGAAGTTGGATTAAAGATTAGTCGTTCGCTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCGAGCTTCAGGCACAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAACACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTTTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGCTTGATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACATGTAGAAAGTTAAGGATAAGCCATAGCAATGGAAAAATGATAAAACACCATCAGTGTAAAGTGTGTTGCCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTAGTAAAAGAAGGAACACGGCCTCTCGAAGAGCATACAAGTGTAGGTTGTGCAAGAAAGAGGGACATAATTCTAGGACATGTTCTAGTAGGACACTTGTTACTGAACATCCTCAAGATTAA 1191 0.4425 MISNQVHVFRSPFPVLKYPCSKPPNTRLLFLLHANTNATLLPSPTILCSSLSDDSFSTPKPNQFGYNPPEELFGLEVELKPSKANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDCVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPELQAQRVAAIKKAKGTVAARKHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFTCRVCGEKGHNRRTCRKLRISHSNGKMIKHHQCKVCCQFGHNRRTCPQAVPSKRRNTASRRAYKCRLCKKEGHNSRTCSSRTLVTEHPQD 396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1236 396 SUPERFAMILY Retrovirus zinc finger-like domains 332 387 IPR036875 GO:0003676|GO:0008270
Ssu5g1236 396 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 45 388 - -
Ssu5g1236 396 Gene3D - 334 391 - -
Ssu5g1236 396 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 Gene3D - 275 325 - -
Ssu5g1236 396 ProSiteProfiles Zinc finger CCHC-type profile. 308 323 IPR001878 GO:0003676|GO:0008270
Ssu5g1236 396 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 45 388 - -
Ssu5g1236 396 SUPERFAMILY Retrovirus zinc finger-like domains 278 324 IPR036875 GO:0003676|GO:0008270
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1236 13 389 C2H2 Transcription Factor Family AT5G20220 59.542 8.87e-159 451
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1236 - - gmx:100800156 698.353