Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1235 ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGCCCAAGAAGCCATAGGTTGCCCATGATAGATGATAGTGAGGTTATTGCCACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCGTCTATGTCAGTGTTAGGAGGCAATGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTGGTGGCCAATCGACTGCCACCACTGTGAAGAGAAGCTCAAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACtcagaagaagaaaggaaagcAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCTCTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACGGTAAGCAAGGAAGAATATCTTGCTTCATTGAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCAGCACGTGCATATGATATTGCAGCAATAGAATACAGAGGCATAAATGCAGTAACAAACTTTGACTTAAGCACCTACATCAGATGGCTAAGACCAGCAACACATCCTACTGCTTCTCAAGGTCAAAAGCCTAGCCCTGATGCTCAACCCTTTGCAACCTCTAACTCCATGCAAGCCAGAGGGAACACTGAGGTATCCAACTCCAACATGCATTCATTCCCCTCAGGTGAATTGGACAGTACCAAGAAGCAAGATTTTTCCAAGTGCATGACCCCTTTGAGTCCTTGCAACAAGTCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCAGAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAgtgaagaagctgaagaagttGAATTGAAATACCCACAAGAGGGCAATGATGGTAATGGAGGGATTTATGATAATGACAACACCAGTAACTCATACTTTTGCTCTTCTAATATCAACAGATTACCTAACTTGGAGTCATCAGAAGAGAGTTCATTGCCTATGTATAATGGAACTGTGCAATCCCTATGGAATAGTGCTTTCAACATGTCTAACTGA 1191 0.4181 MELAPVKSELSPRSHRLPMIDDSEVIATKCVKRRRRDSSMSVLGGNGQQGEQLEEQKQLGGQSTATTVKRSSRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPATHPTASQGQKPSPDAQPFATSNSMQARGNTEVSNSNMHSFPSGELDSTKKQDFSKCMTPLSPCNKSSSPTALGLLLKSRVFRELMQRNLNSSSEEAEEVELKYPQEGNDGNGGIYDNDNTSNSYFCSSNINRLPNLESSEESSLPMYNGTVQSLWNSAFNMSN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1235 396 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Ssu5g1235 396 MobiDBLite consensus disorder prediction 41 70 - -
Ssu5g1235 396 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 Coils Coil 315 335 - -
Ssu5g1235 396 MobiDBLite consensus disorder prediction 33 70 - -
Ssu5g1235 396 MobiDBLite consensus disorder prediction 235 281 - -
Ssu5g1235 396 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 Gene3D AP2/ERF domain 66 130 IPR036955 GO:0003700|GO:0006355
Ssu5g1235 396 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
Ssu5g1235 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 390 - -
Ssu5g1235 396 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 ProSiteProfiles AP2/ERF domain profile. 58 128 IPR001471 GO:0003700|GO:0006355
Ssu5g1235 396 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Ssu5g1235 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1235 Ssu-Chr5 40552949 40555539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1235 73 246 AP2-EREBP Transcription Factor Family AT5G57390 62.921 3.85e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu5g1235 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1235 - - gmx:100799621 674.47