Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1234 ATGTTTCCCGCAATCTTGTTTTCTACCCTGAATGCCATCACAGATGGTGATGATGAGTTTAAGCAGAACCATGGCTACGAGGCTGATGGATATTGGCGGGAAAGGGCAGAAGAGGCTAAAAAGGACAATCAGGCAGCTTATTCTGAAGACCCATATGCAGTCTCCGACAACCTGACTTCCAGTGTTAGCGAACTCCTAAAGGGGAAGGATGAACGAAGAAACTTGATGGGGCGAAAAGCCGGAGGTCCATGCACGGCCACGAACCCCATTGACATGTGCTGGAGGTGTGACCCCCACTGGGCCGACGACCGCCAGAAGCTGGCAGATTGCGCGATGGGCTTTGGCAGAAACGCTCTTGGAGGAAAAGGCGGTCCATTCTACGTGGTAACAGATCCCTCAGACGATGACATGGTGAACCCGAAAAACGGCACTCTCCGCCACGCAGTCACGCGTGAAGGGCCACTGTGGATCATCTTTGCTCACAGCATGACCATCACCCTCCAGCAAGAGCTCCTCATGAACAGCCACAAGACCATCGATGGCAGAGGAGTCGACGTTTACATCAAAAACGGTGCCGGCATTACTGTTCAGTATGTCAAGAACATCATCATCCACGGGATTAAGATCTACAACATTGAGGTTCGCGAGGGTGGAATGATCAGAGATTCCGAGACCCATTATGGTTTGAGGACTCGGAGTGATGGCGATGGGATTTCCATCTTCGGTGCTAGCAACGTTTGGATCGACCACGTTTCCATGAGAAATGGCAAAGATGGACTTATCGATGCCATCATGGGATCCACTGCTATCACCATTTCCAACTGCCATTTCACAGACCACAATAAGGTGTTGCTGTTTGGTGCCAGTGACATCTACTCTGGTGATAAGATCATGCAAGTCACTGTGGCATTCAACCACTTTGGCAAGAGATTAGTTCAAAGGATGCCCAGATGCAGATGGGGGTTTGTCCATGTGGTTAATAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCAAGAGCCCCACCATTATCAGTGAGGGTAACCGATTTATTGCCCCTAAGAACGATTTTGCTAAAGAGATTACAAAGAGGGAATGCGAAGAGAGCGAGTGGTCAAGGTGGCAGTGGAGATCAATAAACGATGAATATATGAATGGAGCATTTTTTAGGCAATCTGGGCCGGAGCTGCTTGACAGACCATTCTCAAGCGCAGACATGATCACAGCTAAGCCAGGGAGTCACGTGGGAGCACTTACACGCTATGCTGGCAAGCTTAAGTGTAGGGTGGGCAAGCCTTGTTAG 1311 0.4958 MFPAILFSTLNAITDGDDEFKQNHGYEADGYWRERAEEAKKDNQAAYSEDPYAVSDNLTSSVSELLKGKDERRNLMGRKAGGPCTATNPIDMCWRCDPHWADDRQKLADCAMGFGRNALGGKGGPFYVVTDPSDDDMVNPKNGTLRHAVTREGPLWIIFAHSMTITLQQELLMNSHKTIDGRGVDVYIKNGAGITVQYVKNIIIHGIKIYNIEVREGGMIRDSETHYGLRTRSDGDGISIFGASNVWIDHVSMRNGKDGLIDAIMGSTAITISNCHFTDHNKVLLFGASDIYSGDKIMQVTVAFNHFGKRLVQRMPRCRWGFVHVVNNDYTHWEMYAIGGSKSPTIISEGNRFIAPKNDFAKEITKRECEESEWSRWQWRSINDEYMNGAFFRQSGPELLDRPFSSADMITAKPGSHVGALTRYAGKLKCRVGKPC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1234 436 SUPERFAMILY Pectin lyase-like 88 426 IPR011050 -
Ssu5g1234 436 PANTHER PECTATE LYASE 4 436 - -
Ssu5g1234 436 SMART amb_all 162 359 IPR002022 -
Ssu5g1234 436 Pfam Pectate lyase 171 353 IPR002022 -
Ssu5g1234 436 PANTHER PECTATE LYASE 18-RELATED 4 436 IPR045032 GO:0030570
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Ssu5g1234 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Ssu5g1234 436 Pfam Pectate lyase, N terminus 27 75 IPR007524 GO:0030570
Ssu5g1234 436 Gene3D - 87 429 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1234 Ssu-Chr5 40542059 40545506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1234 29 436 Polysaccharide Lyase AT1G14420 57.882 4.70e-173 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1234 K01728 - gmx:100798579 688.337