Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1229 ATGGGGTTGGGTGCTGAGAATGGAAAGGTGGTGGTGGAGTCTTTGGATGTGTGTAAATCAAAGGggtggaggaagaagaagaaagaggatgGGGAAGTTGATGAAGAAGAGACTGGGTGTTGGTTTAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGTGGCACCAGCACTAATTATGCTGAAAGTAAATCAACTAATGATACAAGTAGAGATCAACCAACAGTCCCAGTTGTCTCTTCGACAACCACTAGTAATGCGGAAAGCAATTCATCAACTTCCAAACTTGAAGAAGAGCTTAAAGTTGCTTCCAGGCTGCGAAAATTCACTTTCAACGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTATTCAAGGGATGGATAGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTATCTTGGTGATCTAGTTCATCCAAACCTTGTTAAACTTATAGGTTACTGCATCGAAGATGATCAAAGGTTGCTTGTGTATGAATTTATGCCTCGGGGAAGCCTGGAAAATCACTTGTTTCGGAGATCCCTGCCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGAGTACAATGCTAAGCTCTCAGATTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACAGGACATCTTACATCTAGAAGTGACGTGTATAGTTTCGGAGTGGTACTCCTTGAGATGTTGACCGGCAGAAGATCTATGGACAAAAACCGACCCAATGGTGAACACAACCTTGTGGAATGGGCTAGACCACATCTGGGAGAGAGAAGAAGGTTCTACAGGTTGATAGACCCGCGCTTGGAAGGTCACTTCTCCATAAAAGGAGCTCAGAAAGCCGCTCATCTGGCCGCTCACTGCCTTAGCCGAGATCCGAAAGCGAGACCCTTGATGAGTGAAGTTGTGGAAGCTTTAAAGCCTCTGCCAAACCTTAAGGACATGGCCAGTTCATCATATTATTTCCAGACAATGCAAGCCGACCGCTTTAGTGCAAGTCCAAACACCAGAAATGGGAGAGCACAAGGAGCATTGCTAACCCGGAATGGGCAGCAGCAGAGGAGCCTATCAATACCACATGGTACTCATGCATCTCCATATCACCATCAGTTTCCCCAACCATCACCAAAACCCAATGGCAAGGCATAG 1458 0.4431 MGLGAENGKVVVESLDVCKSKGWRKKKKEDGEVDEEETGCWFRLRFIGSCISSRSKVDSSVSGTSTNYAESKSTNDTSRDQPTVPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRAQGALLTRNGQQQRSLSIPHGTHASPYHHQFPQPSPKPNGKA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1229 485 PANTHER OS01G0588500 PROTEIN-RELATED 61 475 - -
Ssu5g1229 485 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Ssu5g1229 485 MobiDBLite consensus disorder prediction 55 104 - -
Ssu5g1229 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1229 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Ssu5g1229 485 CDD STKc_IRAK 135 412 - -
Ssu5g1229 485 SUPERFAMILY Protein kinase-like (PK-like) 115 432 IPR011009 -
Ssu5g1229 485 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 61 475 - -
Ssu5g1229 485 MobiDBLite consensus disorder prediction 451 485 - -
Ssu5g1229 485 Pfam Protein tyrosine and serine/threonine kinase 133 409 IPR001245 GO:0004672|GO:0006468
Ssu5g1229 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Ssu5g1229 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Ssu5g1229 485 MobiDBLite consensus disorder prediction 55 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1229 Ssu-Chr5 40421708 40425165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1229 76 409 Glycoside Hydrolase AT3G07070 53.846 1.66e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g1229 PK_Tyr_Ser-Thr 9.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1229 - - gmx:100807510 912.909