Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1224 ATGGCAAGTGAGAAGCTTCATGGGGGTTCAAGCATGACACTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCTCTGAGTTTATTCAGCCTTTTTGGGTTCAAAACTCTGAACCTTCTTTCCAAGGTTCAAAATCCTTGGTTAATGTTGTGAATGTCACGGATAGGCCCTTCTTCCAAGGgcttgagaaagaagaaaacgGTGATGATGAGGATTTTGAGGTGTGCCCCCATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGGTCCTTGAAAGTAACTTCGAGGTAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTTGAAAAAGACTATGACAGGTTGAAAGATGGCTATGACATACTCAAAAGGGACTATGACAATCTCCTTCAAGAGAATGACAAGTTAAAGGAAGAGGTTAATTCTCTCAAGAGCAGATTGATTCccagagagaaagaggaagagaattttGATGATACCTCCTCTGATGCTGTCAACTCACAGCATAGAGAGCAAAtggatattataaaaaatacaggTTCAGAAAATGGATCCAAAGTGACACTTCCTGTTATGGTAATAAGCAAACAGGAAGATGCTAGTTCAGCTAAAAGTGATGTGCTTGATTCGGAGAGCCCACATGTCACTGATGGAAACCAATCCTCAGTCGTGGAGCCTGCAGATTCCTCCCATGCTTTGGAACCAGACCACTCAGATTTCTCGCAAGATGAGGAAGACATCCTAAGCCAAAACATCTTGACCATGCCATTCTTACCAAAGGTTGAAGATGTCTGTTATGGTGATCCACCTGAAAATTCTTGCAGTTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTATTGA 963 0.4071 MASEKLHGGSSMTLLLQKERLPCSSEFIQPFWVQNSEPSFQGSKSLVNVVNVTDRPFFQGLEKEENGDDEDFEVCPHQPGKKRRLTSEQVQVLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYDRLKDGYDILKRDYDNLLQENDKLKEEVNSLKSRLIPREKEEENFDDTSSDAVNSQHREQMDIIKNTGSENGSKVTLPVMVISKQEDASSAKSDVLDSESPHVTDGNQSSVVEPADSSHALEPDHSDFSQDEEDILSQNILTMPFLPKVEDVCYGDPPENSCSFRFPVEDQTFCFWSY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1224 320 CDD homeodomain 79 137 IPR001356 GO:0003677
Ssu5g1224 320 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Ssu5g1224 320 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Ssu5g1224 320 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Ssu5g1224 320 SMART HOX_1 78 140 IPR001356 GO:0003677
Ssu5g1224 320 Gene3D - 75 142 - -
Ssu5g1224 320 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Ssu5g1224 320 SUPERFAMILY Homeodomain-like 70 138 IPR009057 -
Ssu5g1224 320 MobiDBLite consensus disorder prediction 230 273 - -
Ssu5g1224 320 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Ssu5g1224 320 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Ssu5g1224 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 320 IPR045224 GO:0003700
Ssu5g1224 320 Coils Coil 135 176 - -
Ssu5g1224 320 MobiDBLite consensus disorder prediction 230 257 - -
Ssu5g1224 320 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1224 Ssu-Chr5 40094463 40096195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1224 22 177 Homeobox Transcription Factor Family AT3G01470 52.830 3.95e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g1224 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1224 - K09338 gmx:100804328 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1623 2 64692825 64694378 Ssu5g1224 5 40094463 40096195 PCT