Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1217 ATGGGTGCAGGGGACTACTACAAGATCCTCAAGGTGAACCGCAATGCCACAGATGAGGAGCTCAAGAGGGCGTATAAGAGGCTGGCCATGAAGTGGCACCCAGACAAGAACCATCAGCAACACCCAGTTACGAAGGAAGAAGCTGAGGCCAAGTTCAAGCAGATTTCGGAGGCCTATGACGTTCTCAGCAACCCCAAGAAGCGCCAGATCTATGACTTCTACGGCCACTACCCCCTGAACTCTGAGAAGGTGAACAAGGAGAACGGTGATGGAGATGTTAAGGTCCCCAAGGGGGTGAAGGTTGGGGTGGTTGAGAGCAAATTTGTGTGCACCCTTGAGGAACTTTACAGAGGTTGCAAAAAGAAGTTGAAGATCTCAAGGACTTTTCCTGATGAGTTCGGTAAGTTGAAGACTGTGGAAGAGGTCTTGAAAATTGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAAATACTGCTCCTGATGATCTAATCTTTGTGGTGGATGAGAAACCGCATGCTTTTTTCAAGAGGGATGGAAATGATTTGGTTGTCACACAGAAAATCTTACTTCTAGAGGCTCTAGTGGGAAAGACTCTTAACTTGACAACCTTGGATGGAAGAGAGCTCACAATTCAAGTGACTGATGTTGTCAAACATGGATATGTGTTGGTGGTCCCAAATGAAGGAATGCCCATTTCAAAGGAACCTGGCAAGAAAGGAAATTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCACACAACAGAAGTACGAGCTGAAAAGGATTTTGAGCAACACTGATGACTAA 852 0.4519 MGAGDYYKILKVNRNATDEELKRAYKRLAMKWHPDKNHQQHPVTKEEAEAKFKQISEAYDVLSNPKKRQIYDFYGHYPLNSEKVNKENGDGDVKVPKGVKVGVVESKFVCTLEELYRGCKKKLKISRTFPDEFGKLKTVEEVLKIDIKPGWKKGTKITFPGKGNQEAENTAPDDLIFVVDEKPHAFFKRDGNDLVVTQKILLLEALVGKTLNLTTLDGRELTIQVTDVVKHGYVLVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTTQQKYELKRILSNTDD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1217 283 Gene3D - 184 264 - -
Ssu5g1217 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Ssu5g1217 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Ssu5g1217 283 PRINTS DnaJ domain signature 67 86 IPR001623 -
Ssu5g1217 283 PRINTS DnaJ domain signature 47 67 IPR001623 -
Ssu5g1217 283 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Ssu5g1217 283 CDD DnaJ_C 110 266 - -
Ssu5g1217 283 CDD DnaJ 5 64 IPR001623 -
Ssu5g1217 283 Gene3D - 102 182 - -
Ssu5g1217 283 Gene3D DnaJ domain 2 95 IPR036869 -
Ssu5g1217 283 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 280 - -
Ssu5g1217 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 186 271 IPR008971 GO:0006457|GO:0051082
Ssu5g1217 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 107 184 IPR008971 GO:0006457|GO:0051082
Ssu5g1217 283 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Ssu5g1217 283 Pfam DnaJ C terminal domain 105 263 IPR002939 -
Ssu5g1217 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 280 - -
Ssu5g1217 283 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Ssu5g1217 283 SMART dnaj_3 4 67 IPR001623 -
Ssu5g1217 283 Pfam DnaJ domain 5 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1217 Ssu-Chr5 39896856 39898635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1217 6 74 C2H2 Transcription Factor Family AT1G74250 36.232 4.28e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1217 K09510 - gmx:100786068 494.582