Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1205 ATGGATCCGGGTGCGATGATGAACGAGGGCTCCTTTGCGAATAATAACGGGAGCGGCAATGCGGCGCCGTATAGCTTGCCGGAGATCTGGCAGTTCCCGCAAGCGATGAATGGCGGCGGGGTACTGGGGCTCAGAAGGCCGCAGTTCGGACATGGGCCGGGGCAGTTTGGGGATTTCGCTCCCGCGCCGAACCATGGGCTTGGGCCCAGTAGTGGCCGAAAGAGGCGCGACTCCGAGGACGATTCCGCTAAGGCCGTGTCCACCAGCAATGTCGTGAATGAGGGTGACGGAAAACGCGTTAAAGCAACGGGGAATAGGAACGAGGGTGGGGATGGTAATAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCTAAGCCAGCTTCGGAGCCTCCGAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCCGAACGAGCTAGAAGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTCGatgagataattaattatatccaaTCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACTCTGGTATTGAAGCGTTTCCTCCTAAAGATTTTGGTCTGCAAACATTTGATCCATCTGGCATACCATTCGGTTCACAAGCGCCAAGAGAGTATAGCAGAGGTTCTTCACCAGAGTGGTTACATATGCAGGTAGGTGGCTTTGAAAGAACAACGTAG 810 0.5099 MDPGAMMNEGSFANNNGSGNAAPYSLPEIWQFPQAMNGGGVLGLRRPQFGHGPGQFGDFAPAPNHGLGPSSGRKRRDSEDDSAKAVSTSNVVNEGDGKRVKATGNRNEGGDGNKGEGEVSSGKPAEQSAKPASEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGLQTFDPSGIPFGSQAPREYSRGSSPEWLHMQVGGFERTT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1205 269 MobiDBLite consensus disorder prediction 37 140 - -
Ssu5g1205 269 Coils Coil 196 216 - -
Ssu5g1205 269 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Ssu5g1205 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Ssu5g1205 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 269 IPR024097 GO:0006355
Ssu5g1205 269 PANTHER BNAC05G07950D PROTEIN 1 269 - -
Ssu5g1205 269 Gene3D - 146 222 IPR036638 GO:0046983
Ssu5g1205 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 216 IPR036638 GO:0046983
Ssu5g1205 269 CDD bHLH_AtBPE_like 139 224 - -
Ssu5g1205 269 SMART finulus 155 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1205 Ssu-Chr5 39633506 39636146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1205 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.044 1.40e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1205 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1205 - - gmx:100784478 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1678 2 65892226 65895078 Ssu5g1205 5 39633506 39636146 PCT