Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1204 ATGAAGGGATGGGACGGGATTcaatcttctttctcttctcgaTCGAGTTCCACGTTGGGCCAGCAAGCTTCCTCTCGAACGGTTCGACTCGGCCGAGTCCAGCCTCAGGCCCCGACTCACCGCACCATCTTCTGCAACGATCGCGAGGCCAATCTTCCCATCCGATTCAAGGGGAATTCTATATCAACTACCAAATATAACTTCTTCACCTTTTTGCCTAAAGGATTATTTGAACAGTTCAGACGGGTGGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCAACCACGCCAATTAGTCCTGTGTCTCCAATAACTAATGTGCTTCCTCTATCGCTGGTGCTTCTTGTCTCTCTTATTAAGGAAGCTTTTGAGGACTGGAAGCGTTTTCAAAATGATATGGCCATAAACAATAATACGATAGATGTTTTACAAGATCAAAAGTGGGAGTCTTTACCCTGGAAAAAGTTGCAGGTTGGAGACATTGTCAAGATTAAGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTCTTGGCTAGCACTAATGCAGATGGTGTCTGCTACATtgagACTGCTAATCTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTATGTGACTCCAGAGAAGGCGTCTGAGTTTAAAgGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTTACTGGAAATCTTATAACTCAAAAGCAAACACTGCCTCTCACTCCAAATCAAATTTTGTTGCGAGGTTGCAGTCTGAGGAATACAGAATATATTGTTGGGGTTGTTATATTTACAGGACACGAAACAAAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGACAAGCTCATACTAACTCTATTTGCAACTCTATTCATGATGTGTTTCATTGGAGCCATAGGCAGTGCCATCTtcgtaaacaaaaaatatttttacttacatCTTGATTCATCAGAGGAGGGCTCAGCACAGTTCAACCCCAAAAACAGATTTTTGGTTCTTATCCTGACTATGTTTACCCTTATCACACTATACTCAACAATAATCCCCATTTCACTTTATGTGTCCATAGAGatgataaaatttattcagTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGACAAAACTGGGACTCTGACAAGAAATTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGCGATGGCTTGAAGATTGAGGAAAATAGTTCTCCCAATGCAGTGCAAGAGAGgggttttaattttgatgatgCTAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTCTGCAAGGAATTCTTCAGATGCCTTGCTGTATGCCATACTGTACTTCCCGAGGGTGATGAGTCCCCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCCAAAAACTTTGGTTTCTTTTTCTACAGACGCACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGATGTGTCTTATGAGATTTTAAATGTGCTCGAGTTTAATAGTACAAGGAAGCGGCAGTCTGTTGTATGTCGTTATCCAGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGACTGGCTGatggtaataataatatcaagaaAGTCACCAGGGAGCACTTGGAACAATTTGGATCTGCTGGACTACGCACATTATGCCTAGCCTACAAAGAATTGCATCCTGATGTTTATGAAAGTTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAGTTGGATGAGGTGGCAGAACTTATTGAAAATGATCTCATTTTAATTGGTAGTACAGCCATAGAAGACAAGCTTCAAGAGGGAGTACCAGCTTGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAACTTAATAAACAATGAGATGAAGCAATTTGTTATTAGTTCAGAAACGGATGCAATTAGAGAAGTTGAAGACAGGggTGACCAAGTAGAAATTGCACGATTTATCAAAGAAGAGGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCAGAGAGCTATTTTCACTCCCTATCTGGACCCAAATTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTGAATCTAAGTTTGAATTGTCATGCTGTTGTTTGCTGCCGAGTTTCTCCTTTGCAGAAAGCACAGGTCACAAGTATGGTCAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGTGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGATTATGCAAGGTTGTGATATACTTCTTTTACAAGAATCTTACTTTCACTCTTACTCAGTTTTGGTTTACATTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTGCCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAGAAATGTTTTCTTCAAATGGAAAGTTGTGGCCATATGGGCCTTCTTTTCTGTATACCAGTCTCTAATATTCTACTATTTTGCGAGTACATCAAATTTAAGTGCTAAAAACTCAGCAGGAAAGATATTTGGACTCTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACCGTCAACTTGCGACTACTTATGATTTGTAATTCGATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCctggtttatttttatttttatatattcggGGATTTCCACTCCTTATGATCGTCAGGTAAATTCCCTTTCTACTCTGGGTGTGGTGTGTTGA 3297 0.3861 MKGWDGIQSSFSSRSSSTLGQQASSRTVRLGRVQPQAPTHRTIFCNDREANLPIRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMAINNNTIDVLQDQKWESLPWKKLQVGDIVKIKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLITQKQTLPLTPNQILLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFLVLILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLCMYHNETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGLAERDGLKIEENSSPNAVQERGFNFDDARLMRGAWRNEPNPDVCKEFFRCLAVCHTVLPEGDESPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADGNNNIKKVTREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKEEVKKELKKCLEEAESYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAQKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRLCKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSVYQSLIFYYFASTSNLSAKNSAGKIFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQVNSLSTLGVVC 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1204 1098 SFLD Haloacid Dehalogenase 403 903 - -
Ssu5g1204 1098 SUPERFAMILY HAD-like 409 894 IPR036412 -
Ssu5g1204 1098 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Ssu5g1204 1098 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Ssu5g1204 1098 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Ssu5g1204 1098 Pfam Cation transport ATPase (P-type) 518 612 - -
Ssu5g1204 1098 CDD P-type_ATPase_APLT_Dnf-like 58 1012 - -
Ssu5g1204 1098 Gene3D - 550 684 IPR023299 GO:0000166
Ssu5g1204 1098 Pfam Phospholipid-translocating ATPase N-terminal 43 107 IPR032631 -
Ssu5g1204 1098 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1078 IPR023298 -
Ssu5g1204 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 825 931 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g1204 1098 Gene3D - 121 286 - -
Ssu5g1204 1098 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 1090 - -
Ssu5g1204 1098 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 428 690 IPR023299 GO:0000166
Ssu5g1204 1098 SFLD p-type atpase 403 903 IPR044492 -
Ssu5g1204 1098 MobiDBLite consensus disorder prediction 1 32 - -
Ssu5g1204 1098 Pfam Phospholipid-translocating P-type ATPase C-terminal 880 1085 IPR032630 -
Ssu5g1204 1098 Pfam E1-E2 ATPase 137 377 - -
Ssu5g1204 1098 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1088 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu5g1204 1098 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 13 1090 - -
Ssu5g1204 1098 Gene3D - 685 892 IPR023214 -
Ssu5g1204 1098 MobiDBLite consensus disorder prediction 1 34 - -
Ssu5g1204 1098 SUPERFAMILY Calcium ATPase, transduction domain A 138 282 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1204 Ssu-Chr5 39598325 39617038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1204 10 1089 Primary Pumps ATPases AT1G59820 80.296 0.0 1856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1204 K14802 - gmx:100815547 2072.74