Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1202 ATGTCTTCTCAGTCGCCGGAAAGTGACGTCATAGCACCGACACCGGGAGCGTTCAGGCTCCGGTGGGACGTGTTCATGAGATTCAGAGGCACCGACACGCGCGGCGCCATCACGAAGGGCCTCTACGAGTCTTTGCAGGCGCGTGGGATTCGCGTGTTCCTCGACGACGTCGGGTTGGAGCGTGGGGAAGAGATAGCGCGTGGCCTGATGAAGGCCATCGATGACTCAGCGGCGTTCATTGTGATCATTTCTGAAAACTACGCTTCTTCGCATTGGTGTCTGGAGGAACTCGCCAAGATTCGCGAGACCCGGAGGCTGGTCTTGCCCGTTTTCTACCGGGTCGACCCGTCGCAGGTCCGACACCAAAGGGGTCCCTTCGAAGCGGGTTTCGCCTCGCATCAACGAAGGTTTGGGGAAAATAAGGTTTCCAAGTGGAGGGAAGCTTTGAAGAAAGTCGGTGGAGTTGCTGGTTGGGTTTTTAACGATAGTGAGGAAGGTAACCTGATTCGGCGTTTGGTTCAAAGGATAATGAAGGAGTTGAGTAATACTCCTTTGGGGGTGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGAAGGTGTTACAAGTTCAATCCAATGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGCTGGTAAGACCACCCTGGCCAAGGCACTTTTTAATGCCCTTGTCAATCGCTTTGAGCATCGATGCTTCATTTCCAATGTCAGAGAAGTTTCATCAAAACATAATGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTCTTCCCTGGGGCGGGGTCTCCCACCATCAGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGACGAGTTAGTGAGAATCGAGTTTTACTAGTCttggatgatgttgatgatGTAAAGCAGCTTGATGCTTTGATTGGTAAGAGGGAAACGGAATGGTTTTATGATGGAAGCCTTGTGATAATCACGACAAGGGACACACAAGTTCTACCCGAGAGTCATGTAAATGAGTTGTATGAAGTTGGGGAATTGTATCCTTCTGAAGCTCTAGAGTTGTTCAGTTACCATGCATGGAGAATAAATAAACCGCCCGAAGATTTTCTGAATCTGTCAGAGAAGATTGTCTCCCTGACGGCAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGTAAGAGGAGGGTGGAGGAATGGGAGGATGCTGTGGAGAAGCTGAGACTAATTCGCCCCCAGAATCTTCAGGACGTGTTGAAGATAAGTTATGATGGGTTAGATGAAGAAGAGAAGTCTATATTCCTTGACATTGCTTGTTTGTTTGTCCAAATGGGAATGAAGCGTGAAGACGTGATTGATGTGTTAAGAGGTTGTGGTTTTAGGGGTGAGATAGCTATCACGGTACTTGTGCAGAAATGCTTAATCAAAATCACCGAGGACAATACCCTGTGGATGCATGATCAAATTAGAGACATGGGTAGGCAAATTGTTGTACATGAAAGCCTTGGTGGTCCTGGTATGCGTAGTAGACTCTGGGATCGTGCTGAAATCATGGCTGTTTTGGAGGGTCACATGggAACTAGAAGTATTCAAGGAATTGTGCTTGATTTTGAGGAAGATAGATTTTATAAAACCAAGGCCAGATCtgttttttcaaagaaaattcaATGGAGATCAAATTTAAGAAAGGTATCAGGATACTTCAAACACTGCCTTAAGAATTATCTCCAACCTCAGGCAGAGAAAAACAAAGTGGTTATACTTCATACGACATCCTTTGAACCAATGGTTAATCTACGACAGCTTCAGATCAATAATCTGAAATTACAAGGCAAGTTTCTGCCAGCTGAACTGAAGTGGCTACAACGGCAAGGATGCCTTTTCGAACGCATGCCTTTGAAATCTTGGCCACGAGAGCTGGCTGTCCTTGATCTCAAAAACAgcaagaaaatagagaaattgtGGGGATGGAATGGTTCCAAGTTAAAAGCATTACCAGAAAACATAGGAAGCCTGAAATCCTTGAAAGCACTTCATGCTGATGACACAGCTATAACAGAGTTGCCTCAGTTCATTTTTCACCTCACCAAACTTGAACGGCTTGTTTTAGAAGGTTGCCAACATTTGAGAAGGCTGCCTAGGTGTATAGGACTTCTATGTTCTTTGCAAGAATTATCTCTATATCGGTCCGGATTAGAAGAATTACATGACTTTGTTGGATCAGTGAATAACCTTGAGACACTCGGTTTGATGTGTGAATCTCTCACTGTAATTCCTGATTCTATAGGCAATCTCATATCATTGACAAAACTTGTGTTTGATGGAACTGCGATTAAAGAACTACCTTCTACCATTGGTTCTTTATCTTATCTGAGGAAGTTATCTGTTGGAAACTGTAAATTTCTCAGTAAATTgccaaattcaattaaaaatttagccTCAGTTGTTGAGCTTCAGTTAAATGGAACAGCCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAACTACTGAGGAAGCTTGAGACGATGAATTGTAGATGTCTTGAATATTTACCAGAATCTATTGGCCACCTAGCATCTCTTACTACACTGAACATGGTCAATGGAAATATCAGGGAATTGCCAGAGTCAACTGGATTGCTAGAAAATCTTGTCACCTTAAGATTGAACAAATGCAAAATGCTCGGAAAGATTCCAGCTTCTATAGGAAATTTGAAATCTCTATATCACTTTTTCATGGAGGAAACGGCTGTGTCAAACTTCCCTGAAAGCTTTGGGATGCTCTCAAGTTTGAGAACATTGAGAATGGCAAACAGGCCTGCTGACTTAAATCCCAATGAAAATAGCTTCCTTGCAGAACTTGAAGTGAACCCCAACTCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGTTTGATGCCCGAGCCTGGAGAATATCTGGGAAAATTCCAGATGAATTTGAGAAGTTATCACATTTAGAGACTTTAAATTTGGGCCAGAATAATTTTCACAGCCTTCCTTCCAGCTTGAAGGGCCTTTCTATTCTCAAGGTGCTTTCACTGCCAAACTGCACTCAGCTGATCTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAGCTGAATCTTGAAAACTGTTCTGCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGGCTGCAGGAGTTGAAACTCACAAACTGTGTAGAAGTGGTGGATATTCCTGGTCTTGAAAGCTTGAAGTCCTTGAAAAGGTTGTACCTGAGTGGTTGCATGCTCCTCACAAATACGCAAAAGACTCTCAAAGATTGTTCATGCCTTTTCTATCCCTCAACCTTTgatcaatga 3396 0.4258 MSSQSPESDVIAPTPGAFRLRWDVFMRFRGTDTRGAITKGLYESLQARGIRVFLDDVGLERGEEIARGLMKAIDDSAAFIVIISENYASSHWCLEELAKIRETRRLVLPVFYRVDPSQVRHQRGPFEAGFASHQRRFGENKVSKWREALKKVGGVAGWVFNDSEEGNLIRRLVQRIMKELSNTPLGVPEFAVGLDERVEKVMKVLQVQSNGVKVLGLYGMGGAGKTTLAKALFNALVNRFEHRCFISNVREVSSKHNDGLVSLQSKIIKDLFPGAGSPTISDVNVGISAIKGRVSENRVLLVLDDVDDVKQLDALIGKRETEWFYDGSLVIITTRDTQVLPESHVNELYEVGELYPSEALELFSYHAWRINKPPEDFLNLSEKIVSLTARMPLALEVFGSFLFGKRRVEEWEDAVEKLRLIRPQNLQDVLKISYDGLDEEEKSIFLDIACLFVQMGMKREDVIDVLRGCGFRGEIAITVLVQKCLIKITEDNTLWMHDQIRDMGRQIVVHESLGGPGMRSRLWDRAEIMAVLEGHMGTRSIQGIVLDFEEDRFYKTKARSVFSKKIQWRSNLRKVSGYFKHCLKNYLQPQAEKNKVVILHTTSFEPMVNLRQLQINNLKLQGKFLPAELKWLQRQGCLFERMPLKSWPRELAVLDLKNSKKIEKLWGWNGSKLKALPENIGSLKSLKALHADDTAITELPQFIFHLTKLERLVLEGCQHLRRLPRCIGLLCSLQELSLYRSGLEELHDFVGSVNNLETLGLMCESLTVIPDSIGNLISLTKLVFDGTAIKELPSTIGSLSYLRKLSVGNCKFLSKLPNSIKNLASVVELQLNGTAITNLPDEIGEMKLLRKLETMNCRCLEYLPESIGHLASLTTLNMVNGNIRELPESTGLLENLVTLRLNKCKMLGKIPASIGNLKSLYHFFMEETAVSNFPESFGMLSSLRTLRMANRPADLNPNENSFLAELEVNPNSFVLTSSFCNLTLLTEFDARAWRISGKIPDEFEKLSHLETLNLGQNNFHSLPSSLKGLSILKVLSLPNCTQLISLPSLPSSLIELNLENCSALETIHDMSNLERLQELKLTNCVEVVDIPGLESLKSLKRLYLSGCMLLTNTQKTLKDCSCLFYPSTFDQ 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1202 1131 Gene3D - 20 179 IPR035897 -
Ssu5g1202 1131 SUPERFAMILY L domain-like 594 823 - -
Ssu5g1202 1131 Pfam NB-ARC domain 196 419 IPR002182 GO:0043531
Ssu5g1202 1131 SMART LRR_typ_2 730 753 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 870 893 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 823 846 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 683 706 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 1096 1119 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 1006 1028 IPR003591 -
Ssu5g1202 1131 SMART LRR_typ_2 776 799 IPR003591 -
Ssu5g1202 1131 Gene3D Ribonuclease Inhibitor 745 928 IPR032675 -
Ssu5g1202 1131 Gene3D Ribonuclease Inhibitor 590 744 IPR032675 -
Ssu5g1202 1131 Gene3D Ribonuclease Inhibitor 969 1125 IPR032675 -
Ssu5g1202 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Ssu5g1202 1131 SMART till_3 21 155 IPR000157 GO:0007165
Ssu5g1202 1131 PANTHER TMV RESISTANCE PROTEIN N-LIKE 662 1107 - -
Ssu5g1202 1131 Gene3D - 354 438 IPR042197 -
Ssu5g1202 1131 PRINTS Disease resistance protein signature 388 402 - -
Ssu5g1202 1131 PRINTS Disease resistance protein signature 1027 1043 - -
Ssu5g1202 1131 PRINTS Disease resistance protein signature 214 229 - -
Ssu5g1202 1131 PRINTS Disease resistance protein signature 293 307 - -
Ssu5g1202 1131 ProSiteProfiles TIR domain profile. 20 180 IPR000157 GO:0007165
Ssu5g1202 1131 ProSiteProfiles Leucine-rich repeat profile. 1008 1030 IPR001611 GO:0005515
Ssu5g1202 1131 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 158 IPR035897 -
Ssu5g1202 1131 Pfam TIR domain 22 183 IPR000157 GO:0007165
Ssu5g1202 1131 PANTHER TMV RESISTANCE PROTEIN N-LIKE 19 666 - -
Ssu5g1202 1131 Gene3D - 180 347 IPR027417 -
Ssu5g1202 1131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 662 1107 IPR044974 GO:0006952
Ssu5g1202 1131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 666 IPR044974 GO:0006952
Ssu5g1202 1131 SUPERFAMILY "Winged helix" DNA-binding domain 426 532 IPR036390 -
Ssu5g1202 1131 SUPERFAMILY RNI-like 768 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1202 Ssu-Chr5 39580702 39585935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1202 22 915 WRKY Transcription Factor Family AT4G12020 28.447 5.30e-72 261