Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1201 ATGATGTCATCTCGGTCGCCGGAAAGTGACGTCATAACGCCGACTCCGGGTGCGTTCAGGCTCCGGTGGGACGTATTCCTGAGCTTCAGAGGCACCGACACGCGCGGCACCATCACGATGGGCCTCTACGAGTCTCTGCAGGCTCGTGGGATTCGCGTGTTCCTCGACGACGTCGGGTTGGAGCGTGGGGAAGAGATAGCGCGTGGCCTGATGAAGGCCATCGATGACTCAGCGGCGTTCATTGTGATCATTTCTGAAAACTACGCTTCTTCGCATTGGTGTCTGGAGGAACTCGCCAAGATTTGCGAGACCCGGAGGCTGGTCTTGCCCGTTTTCTATCTGGTCGACCCGGCGCAGGTCCGACACCAAAGGGGTCCCTTCGAAGCGGGTTTCGCCTCGCATCAACGAAGGTTTGGGGAAAATGAGGTTTCCAAGTGGAGGGAAGCTTTGAAGAAAGTTGGTGGAATTGCTGGCTTGGTTTTTGATGGCAGGGAAGATAACCTGGTTCGGCTTTTGGTGCAAAGAGTAATGAAGGAGTTGAGTAATATTCCTTTGAGTGTGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGAATGTGTTACAAGTTCAATCCAATGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACCACCCTAGCCAAGGCACTTTTCAATGCCCTTGTCAATCGTTTTGAGCATCGTTGCTTCATTTCCAATGTCAGAGAAGTTTCATCAAAACATGATGGTTTGGTTTTCCTTCAAAGCAAAATCATTAAAGACCTTTTCCCTGGGGCGGGGTCTCCCCCCATCAGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGACGAGTTAGTGAGAATCGAGTTTTACTAGTCttggatgatgttgatgatGTAAAGCAGCTTGATGCTTTGATTGGTAAGAGGGAATGGTTTTATGATGGAAGCCGTGTGATAATCACCACAAGGGATATACAAGTTCTACCCGTGAGTCATGTAAATGAGTTGTATGAAGTTAGGGAATTGTATCCTTCTGAAGCTCTAGAGTTGTTCAGTTACCATGCATGGAGAATAAATAAACCGCCGGAAAATTTTCTGAATCTGTCAGAGAAGATTGTGCCCCTCACGGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGTAAGAGGAGGGTGGAGGAATGGGAGGATGCTGTGGAGAAGCTGAGACTAATTCGCCCCCAGAATCTTCAGGACGTGTTGAAGATAAGTTATGATGGGTTAGATGAAGAAGAGAAGTCTATATTCCTTGACATTGCTTGTTTGTTTGTCCAAATGGGAATGAAGCGTGAAGACGTGATTGATGTGTTAAGAGGTTGTGGTTTTAGGGGTGAGATAGCTATCACGGTACTTGTGCAGAAATGCTTAATCAAAATCACTGAGGACAATACCCTGTGGATGCATGATCAAATTAGAGACATGGGTAGGCAAATTGTTGTACATGAAAGCCTTGGTGATCCTGGTATGCGTAGTAGACTCTGGGATCGTGCTGAAATCATGGCTGTTTTGGAGGATCACATGgGAACTAGATCGATTCAAGGAATTGTGCTAGATTTTGAGGatgaaagattttataaaagcaAGGCCGGATCAGTTTTTTCTAAGAACCTTCAATGGAGATCAATTATAACAAATGTATCAGGATACATCAAACAATGCCTTAAGAATTATCTCCAACCTCAAGCAGAGAAAAACAAAGAGGTTATACTTCACACGAAATCCTTTGAACCAATGGTTAATCTGAGACAGCTTCAGATCAATAATCTGAAATTAGAAGGCAACTTTCTTCCAGCTGAACTGAAGTGGCTACAATGGCAAGGATGCCCTTCAGAGCGCATGCCTTTGAAATCTTGGCCACGAGAGCTGGCTGTCCTTGATCTCAAAAACAGCAAGAAAATAGAAACCTTGTGCGGATGGAATGGTTACAAGGTGCCAGAGAACTTAATGGTCTTGAACCTCTCCTACTGCATCCAACTTACTGCTATCCCTGATTTATCTGGGTGTCAACGTCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAAGTAAGATTCATGAATCAATTGGCAGTTTGAGTACCTTGCGCAGCTTAAATTTGACACGATGTTCAAGCCTTATCAACCTTCCCATTAATGTCTCGGGGCTAAAAAATCTAGAGAGACTTTTTCTTTCCGGCTGCTCCCAGTTAAAATCATTACCAGAAAACATAGGAAGCCTGAAATCTTTGAAAGCACTTCATGCTGATGACACGGCTATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCACCAAACTTGAACGGCTTGTTTTAGAAGGTTGCCAACATTTGAGAAGGCTGCCTAGTTGTATAGGACTTCTATGTTCTTTGCAAGAATTATCTCTATACCGGTCTGGATTAAAAGAATTACCTGACTCTGTTGGATCATTGAATAACCTTGAGAGACTCAATTTGATGTGGTGTGAATCTCTCACTGTAATTCCTGATTCTATATGCAATCTCATATCATTGGCAGAACTTTTGTTTGATAGTACTGCGATTAAAGAACTCCCTTCTACCATTGGTTCTTTATCTTACCTGAGGGAGTTATCTGTTGGAAACTGTAAATTTCTCACTAAATTgccaaattcaattcaaaatttggcCTCAGCTGTTGAGCTTCAGATAAATGGAACAGCTATCACAAATTTGCCAGATGAGATTGGAGAGATGAAACTACTGAGGAAACTTGAGATAATGAATTGTAAATGTCTCGAATATTTACCAGAATCTATTGGCCACCTAGCATCTCTTACTACACTGAACATGGTCAATGGAAGTATCAGGGAATTGCCAGAGTCCACTGGAATGCTAGAAAATCTTGTGACCTTGAGATTGAACAAATGTAGAATGCTCAGAAAGCTTCCTGCTTCTATTGGGAATTTGAAATCTCTATATCACTTTTTCATGGAGGAAACGGCTGTGTCAAACTTACCTGAAAGCTTTGGGATGCTCTCAAGCTTGAGAACATTGAGAATGGCAAAGAGGCCTGATTTAAATCCCAGTGAAAATAGCTTCCTTGCAGAACCTGGAGAGAACCCCAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCCCGAGCCTGGAGAATATCTGGGAAAATTCCTGATGAATTTGAGAAGTTATCACAATTAGAGACTTTAAATTTGGGCCAGAATAATTTTCACAGCCTTCCTTCCAGCTTGAAGGGCCTTTCTATTCTCAAGGTGCTTTCACTGCCAAACTGCACTCAGCTGATCTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAGCTGAATCTTGAAAACTGTTCTGCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGGCTGCAGGAGTTGAAACTCACAAACTGTGTAGAAGTGGTGGATATTCCTGGTCTTGAAAGCTTGAAGTCCTTGAAAAGGTTGTACCTGAGTGGTTGCGTTGCATGCTCCTCACAAATACGCAAAAGACTCTCAAAGGTTGCACTGAGGAATTTACAGAACTTGAGCATGCCAGGAGGCAAATTACCTGAATGGTTGTCAGGACAAACTGTCAGCTTTTCCAAGCCTAAATATCTTGAGCTAAAAGGTGTActtgttggtgttgttctttCAATCAACCATAACATTGATATACCTAATATGAAGCGAGATCATATGCCCGGCGTGATTGATGTTCAAGCAAATGTTCTCAAACTGGGCAAAACTCTCTATAGTACAGTGTTAAACATCCGTGGGGTGCCAAGGACAGACGAAGAACACATACACTTGTGTAGGTTCCATGATTACCATCAGTTGATAGCCTTTTTAAAAGATGCTGATACATTTTGTGTGAGTAAGAGAAATCCACCTTTTGATAAGGGGTTGgagttaaaaaaatgtggggTTCATTTAATCTTTGAAGGGGATGATGATTATGATCAAGATGAAGAATCATTGGACAAAGGCCTACAATCTGTCTCAGAAAAATTGGCCAATTTTTTCAACACTTACGAAGGTGGTGGACCTGGTGGTCCTATGTATGATAATGAAGATGAATGTCAAAAGGAATTGGAGATGCTGGAACAAGAGCCAAGATCTTTTCGCATTACACTTCAAAGCAATTTCATTCTTCTCTTTCTGATTGGTCTATTCCTTTCTTTGTGCTATATGAATTGGTGTTGCTTAGAAGAGATTGATACATACTTCAGCTGA 4323 0.4187 MMSSRSPESDVITPTPGAFRLRWDVFLSFRGTDTRGTITMGLYESLQARGIRVFLDDVGLERGEEIARGLMKAIDDSAAFIVIISENYASSHWCLEELAKICETRRLVLPVFYLVDPAQVRHQRGPFEAGFASHQRRFGENEVSKWREALKKVGGIAGLVFDGREDNLVRLLVQRVMKELSNIPLSVPEFAVGLDERVEKVMNVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISNVREVSSKHDGLVFLQSKIIKDLFPGAGSPPISDVNVGISAIKGRVSENRVLLVLDDVDDVKQLDALIGKREWFYDGSRVIITTRDIQVLPVSHVNELYEVRELYPSEALELFSYHAWRINKPPENFLNLSEKIVPLTGRMPLALEVFGSFLFGKRRVEEWEDAVEKLRLIRPQNLQDVLKISYDGLDEEEKSIFLDIACLFVQMGMKREDVIDVLRGCGFRGEIAITVLVQKCLIKITEDNTLWMHDQIRDMGRQIVVHESLGDPGMRSRLWDRAEIMAVLEDHMGTRSIQGIVLDFEDERFYKSKAGSVFSKNLQWRSIITNVSGYIKQCLKNYLQPQAEKNKEVILHTKSFEPMVNLRQLQINNLKLEGNFLPAELKWLQWQGCPSERMPLKSWPRELAVLDLKNSKKIETLCGWNGYKVPENLMVLNLSYCIQLTAIPDLSGCQRLEKIDLENCINLSKIHESIGSLSTLRSLNLTRCSSLINLPINVSGLKNLERLFLSGCSQLKSLPENIGSLKSLKALHADDTAIAELPQSIFRLTKLERLVLEGCQHLRRLPSCIGLLCSLQELSLYRSGLKELPDSVGSLNNLERLNLMWCESLTVIPDSICNLISLAELLFDSTAIKELPSTIGSLSYLRELSVGNCKFLTKLPNSIQNLASAVELQINGTAITNLPDEIGEMKLLRKLEIMNCKCLEYLPESIGHLASLTTLNMVNGSIRELPESTGMLENLVTLRLNKCRMLRKLPASIGNLKSLYHFFMEETAVSNLPESFGMLSSLRTLRMAKRPDLNPSENSFLAEPGENPSPFVLTSSFCNLTLLTELDARAWRISGKIPDEFEKLSQLETLNLGQNNFHSLPSSLKGLSILKVLSLPNCTQLISLPSLPSSLIELNLENCSALETIHDMSNLERLQELKLTNCVEVVDIPGLESLKSLKRLYLSGCVACSSQIRKRLSKVALRNLQNLSMPGGKLPEWLSGQTVSFSKPKYLELKGVLVGVVLSINHNIDIPNMKRDHMPGVIDVQANVLKLGKTLYSTVLNIRGVPRTDEEHIHLCRFHDYHQLIAFLKDADTFCVSKRNPPFDKGLELKKCGVHLIFEGDDDYDQDEESLDKGLQSVSEKLANFFNTYEGGGPGGPMYDNEDECQKELEMLEQEPRSFRITLQSNFILLFLIGLFLSLCYMNWCCLEEIDTYFS 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1201 1440 Gene3D - 179 344 IPR027417 -
Ssu5g1201 1440 SMART LRR_CC_2 836 863 IPR006553 -
Ssu5g1201 1440 SMART LRR_CC_2 1179 1212 IPR006553 -
Ssu5g1201 1440 SMART LRR_CC_2 930 957 IPR006553 -
Ssu5g1201 1440 SMART LRR_CC_2 694 721 IPR006553 -
Ssu5g1201 1440 SMART LRR_CC_2 883 910 IPR006553 -
Ssu5g1201 1440 Gene3D - 21 178 IPR035897 -
Ssu5g1201 1440 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 158 IPR035897 -
Ssu5g1201 1440 Pfam NB-ARC domain 196 416 IPR002182 GO:0043531
Ssu5g1201 1440 Pfam TIR domain 23 162 IPR000157 GO:0007165
Ssu5g1201 1440 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 1332 IPR044974 GO:0006952
Ssu5g1201 1440 SUPERFAMILY L domain-like 493 924 - -
Ssu5g1201 1440 SUPERFAMILY L domain-like 897 1218 - -
Ssu5g1201 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Ssu5g1201 1440 Gene3D - 351 435 IPR042197 -
Ssu5g1201 1440 PRINTS Disease resistance protein signature 292 306 - -
Ssu5g1201 1440 PRINTS Disease resistance protein signature 385 399 - -
Ssu5g1201 1440 PRINTS Disease resistance protein signature 214 229 - -
Ssu5g1201 1440 PRINTS Disease resistance protein signature 716 732 - -
Ssu5g1201 1440 Gene3D Ribonuclease Inhibitor 1051 1252 IPR032675 -
Ssu5g1201 1440 Gene3D Ribonuclease Inhibitor 591 770 IPR032675 -
Ssu5g1201 1440 Gene3D Ribonuclease Inhibitor 771 964 IPR032675 -
Ssu5g1201 1440 SMART LRR_typ_2 742 765 IPR003591 -
Ssu5g1201 1440 SMART LRR_typ_2 860 883 IPR003591 -
Ssu5g1201 1440 SMART LRR_typ_2 954 977 IPR003591 -
Ssu5g1201 1440 SMART LRR_typ_2 1089 1111 IPR003591 -
Ssu5g1201 1440 SMART LRR_typ_2 813 836 IPR003591 -
Ssu5g1201 1440 SMART LRR_typ_2 766 789 IPR003591 -
Ssu5g1201 1440 Gene3D Ribonuclease Inhibitor 965 1045 IPR032675 -
Ssu5g1201 1440 ProSiteProfiles TIR domain profile. 21 180 IPR000157 GO:0007165
Ssu5g1201 1440 SMART till_3 22 156 IPR000157 GO:0007165
Ssu5g1201 1440 PANTHER TMV RESISTANCE PROTEIN N-LIKE 20 1332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1201 Ssu-Chr5 39568831 39575966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1201 23 889 WRKY Transcription Factor Family AT4G12020 30.596 2.38e-85 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1201 - - gmx:100786934 2250.71