Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1200 atGACCATTCTATTAGTGTTATGCTTGTGTTCAATAACCAATTGTTATGGACCTGGTGCTAGAATGTTGCCTATATATGGAGCAGAAGACCTGGATGAGAGATATCTGAAACTCATCAACAAACATCCCATTAGGAGTATCCAGACAGAGTTTGGGAGTATAATTGATTGTGTTGACATCAACAGCCAGCCAGCTTTTGACCAACCTAATCATAAGCTACAGACTCTGGTTGTGAAATCGAAGGAAGCATTTCGAACAAGAAGCTATAGCACTGCGGACCTCGATGTAGCAGCTCTGTGTTGCAGAGCGACGAAGCAGCGAAACTGGAATGACTTTCCCAATTCGTGGACAACGACGCGACATCGTTTCATGACTTCCCACCTTCGTCCTGCCGCGAGCCCCACCTTTGTTCTCACTCAGCACTCCAAATCTCACCGCAAGGTCATGGAGCTCTGTCGCCAGAAGGAGCTACTTCGCCTACAACAACAGCAAGAGCAATGCTACCATCACACCAACAGATCATGCACCACCTCGCGCAGTGTTCCAGATctgcaaaaaacaaaacaagttcCAGATCTGCAAAAAAACAGAACAAATCTTAGATCTGCAAAAACTAGAACAAGTCCCAGAACTTCTGTCGTCGTTATTGCTCGCTATGGCTACGACCTCACCCACCCCGCTAAGTCCGCCCTCCAATTCTGCCACAAGATGGAGAAGCTTTGCCACTGCCAGTGCACAGAGAAGAAACAAGCCACTACCCGGCCACATCTTGGAAGCACCTCACCCTTATAG 792 0.4646 MTILLVLCLCSITNCYGPGARMLPIYGAEDLDERYLKLINKHPIRSIQTEFGSIIDCVDINSQPAFDQPNHKLQTLVVKSKEAFRTRSYSTADLDVAALCCRATKQRNWNDFPNSWTTTRHRFMTSHLRPAASPTFVLTQHSKSHRKVMELCRQKELLRLQQQQEQCYHHTNRSCTTSRSVPDLQKTKQVPDLQKNRTNLRSAKTRTSPRTSVVVIARYGYDLTHPAKSALQFCHKMEKLCHCQCTEKKQATTRPHLGSTSPL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1200 263 PANTHER GATA TRANSCRIPTION FACTOR 129 175 - -
Ssu5g1200 263 PANTHER GATA TRANSCRIPTION FACTOR 129 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1200 Ssu-Chr5 39550373 39551520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1200 122 163 C2C2-Gata Transcription Factor Family AT2G45050 67.391 7.60e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1200 - - mtr:MTR_8g040850 77.7962